DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.418e-19
Identity = 63/195 (32.31%), Postives = 95/195 (48.72%), Query Frame = 1
Query:   58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            HR G  +  +  + F      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HPHGGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGGG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.418e-19
Identity = 65/201 (32.34%), Postives = 97/201 (48.26%), Query Frame = 1
Query:   58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS--IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCW----PKVRGVAMNPVEHPHGGG 636
            HR G  +  +  + F      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ +  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+HPHGGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.418e-19
Identity = 62/195 (31.79%), Postives = 96/195 (49.23%), Query Frame = 1
Query:   58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            HR G  +  +  + F      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HPHGGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGGG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_VIBFM (50S ribosomal protein L2 OS=Vibrio fischeri (strain MJ11) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 66/180 (36.67%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  VV  + +DP R A +A V F        ++   IA +G+  G  V  G  A +  GN LP+R+IP G+ V  VE   G    +AR++G YA II+   D     ++L SG  + + S  RA IG+V       + L KAG    +        P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 IPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRWR-----GVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_VIBF1 (50S ribosomal protein L2 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 66/180 (36.67%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  VV  + +DP R A +A V F        ++   IA +G+  G  V  G  A +  GN LP+R+IP G+ V  VE   G    +AR++G YA II+   D     ++L SG  + + S  RA IG+V       + L KAG    +        P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 IPAVVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGIQAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQIARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRWR-----GVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SILST (50S ribosomal protein L2 OS=Silicibacter sp. (strain TM1040) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 66/209 (31.58%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  100 ERNGY-LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRT 723
            +RN + +   V  I +DP R A +A V +        ++   +A + +  G  V    KA +  GN +P   +P G +V N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK +      P VRGV MNP++HPHGGG     G  S  R    P  K  P   +RT
Sbjct:   68 KRNKFDVAATVERIEYDPNRTAFIALVKYEDG-----EQAYILAPQRLAVGDKVIASAKADIKPGNAMPFSGMPIGTIVHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGK-----RPSVRGVVMNPIDHPHGGGE----GRTSGGRHPVTPWGK--PTKGKRT 258          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SHEFN (50S ribosomal protein L2 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            V  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN  P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG    +        P VRGVAMNPV+HPHGGG  +  G
Sbjct:   78 VERLEYDPNRTAHIALVLYADG-----ERRYILAAKGMKAGDPIQSGLDAEIKTGNARPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWR-----GVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG N +  +R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGNRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG N +  +R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_POLSQ (50S ribosomal protein L2 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.852e-19
Identity = 70/211 (33.18%), Postives = 107/211 (50.71%), Query Frame = 1
Query:    7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            I  + KG G     H HH +           +++G +   V  + +DP R A +A + F        ++    AA+GM  GQ +  G +A +  GN LP+R+IP G+ +  VE   G    +AR++G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG N +   R      P VRGVAMNPV+HPHGGG
Sbjct:   49 ITTRHKGGG-----HKHHYR----VVDFKRNDKDG-IPAKVERLEYDPNRSANIALIVFADG-----ERRYIPAAKGMTVGQSLMSGSEAPIKSGNNLPIRNIPVGSTIHCVEIMPGKGAQVARSAGGSAVLLAR--EGVYAQVRLRSGEVRRVLIECRATIGEVGNEEHSLRVIGKAGANRWRGIR------PTVRGVAMNPVDHPHGGG 236          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CALFG1.418e-1932.3150S ribosomal protein L2, chloroplastic OS=Calycan... [more]
RK2A_CHLSC1.418e-1932.3450S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RK2A_ATRBE1.418e-1931.7950S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RL2_VIBFM1.852e-1936.6750S ribosomal protein L2 OS=Vibrio fischeri (strai... [more]
RL2_VIBF11.852e-1936.6750S ribosomal protein L2 OS=Vibrio fischeri (strai... [more]
RL2_SILST1.852e-1931.5850S ribosomal protein L2 OS=Silicibacter sp. (stra... [more]
RL2_SHEFN1.852e-1934.6650S ribosomal protein L2 OS=Shewanella frigidimari... [more]
RL2_RICM51.852e-1933.1550S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE1.852e-1933.1550S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_POLSQ1.852e-1933.1850S ribosomal protein L2 OS=Polynucleobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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