DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            V  I +DP R A +A V +        +K   +   G+  G  +  G++A   +GN LP+  IP G  + N+E + G  G + R++G +A +++   + D   +KLPS   +++   C A IG+V         L KAG   H  R      P+VRG  MNPV+HPHGGG
Sbjct:   78 VTAIEYDPNRNARIALVQYEDG-----EKRYILQPAGLGVGDTIIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            V  I +DP R A +A V +        ++   +A + +  G  V   +KA +  GN +P   +P G ++ N+E   G  G +ARA+G YA  +    D    +++L SG  +++   C A +G V+    + +   KAG   HK        P VRGV MNP++HPHGGG  +  G
Sbjct:   78 VERIEYDPNRTAFIALVKYEDG-----EQAYILAPQRLAVGDTVVASQKADIKPGNAMPFSGMPIGTIIHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHK-----GVRPSVRGVVMNPIDHPHGGGEGRTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG N +  +R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG N +  +R      P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 66/210 (31.43%), Postives = 102/210 (48.57%), Query Frame = 1
Query:    7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            I  + KG G     H HH      +  + F      +   V  I +DP R A +A + +        ++   IA  G+  G  +  G +A + VGN LP+R+IP G+ +  +E  +G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG      +      P VRGV MNPV+HPHGGG
Sbjct:   49 ITVRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALLCYADG-----ERTYIIAPRGLEVGATLISGSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-----VKRWMGIRPTVRGVVMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_MICAN (50S ribosomal protein L2 OS=Microcystis aeruginosa (strain NIES-843) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            V  I +DP R A +A + ++       +K   IA  G+  G  V  G+ A   VGN LP+  IP G  V N+E   G  G + RA+G +A +++   + D   ++LPS   ++I   C A IG+V         L KAG   H+ +      P VRG  MNPV+HPHGGG
Sbjct:   78 VAAIEYDPNRNARIALLFYKDG-----EKRYIIAPAGLGVGDTVIAGENAPFEVGNALPLSRIPLGTEVHNIELVPGRGGQMVRAAGGFAQVVA--KEGDYVTIRLPSKEVRMIRRECYATIGKVGNAEARNISLGKAGRTRHRGQ-----RPHVRGSVMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 65/185 (35.14%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 669
            V  I +DP R A +A +TF    P  KQ  + +A + +  G  V  G+   +  GN  P+ S+P G +V NVE  +G  G +AR++G+YA I+    D     ++L SG ++++   C A +G V+        L KAG          N W    P  RGVAMNPV+HPHGGG  +  G  + V
Sbjct:   79 VERIEYDPNRTAFIALITF----PDGKQSYI-LAPQRLSPGDKVVAGESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAGR---------NRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HERA2 (50S ribosomal protein L2 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   13 PQRKGAGSVFKSH--THHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            P +K AG     H  T HR G    ++  + F  +   +   V  I +DP R A +A + +        +K   IA  G+  G  +  G  A + VGN LP+ +IP G+ + N+E   G  G L R++G+ A +++   + +   V+LPSG  +++   C A +GQV         + KAG +    R      P VRG AMNPV+HPHGGG
Sbjct:   36 PLKKHAGRNNHGHITTRHRGGGHKRRYRLIDFKRKKFDIPAKVAGIEYDPNRSANIALLHYTDG-----EKRYIIAPLGLKVGDTLMAGPNAEIRVGNALPLANIPIGSQIHNIELTPGRGGQLVRSAGNTAQLMAR--EGNYATVRLPSGEMRMVHIKCMATLGQVGNVDHQNIMIGKAGRSRWLGR-----RPVVRGSAMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLPN (50S ribosomal protein L2 OS=Chlamydia pneumoniae GN=rplB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 1
Query:   58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            HR G A+  +  + F      +   V  + +DP R A +A +++        +K   +A +G+  G  V  G+ +    G  + ++SIP G  V N+E      G L R++G  A +I+ +P   T  +K+PSG  +++  GCRA IG+V+      +   KAG      R      P VRG AMNPV+HPHGGG  +H G+
Sbjct:   64 HRGGGAKQLYRVVDFKRNKDGITAKVVTVEYDPNRSAYIALLSYEDG-----EKRYILAPKGIQRGDVVVSGEGSPFKPGCCMTLKSIPLGLSVHNIEMRPSSGGKLVRSAGLAAQVIAKSPGYVT--LKMPSGEFRMLNEGCRATIGEVSNADHNLRVDGKAGR-----RRWMGVRPTVRGTAMNPVDHPHGGGEGRHNGY 253          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RK2_OLIPU (50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19
Identity = 58/172 (33.72%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  121 GVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+     +      P VRGV MNPV+HPHGGG
Sbjct:   74 GRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGGG 233          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SYNP22.418e-1933.5350S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_ROSDO2.418e-1931.8250S ribosomal protein L2 OS=Roseobacter denitrific... [more]
RL2_RICCN2.418e-1933.1550S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE2.418e-1933.1550S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_POLSJ2.418e-1931.4350S ribosomal protein L2 OS=Polaromonas sp. (strai... [more]
RL2_MICAN2.418e-1935.8850S ribosomal protein L2 OS=Microcystis aeruginosa... [more]
RL2_METPB2.418e-1935.1450S ribosomal protein L2 OS=Methylobacterium popul... [more]
RL2_HERA22.418e-1932.5550S ribosomal protein L2 OS=Herpetosiphon aurantia... [more]
RL2_CHLPN2.418e-1932.1850S ribosomal protein L2 OS=Chlamydia pneumoniae G... [more]
RK2_OLIPU2.418e-1933.7250S ribosomal protein L2, chloroplastic OS=Olimara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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