DY260187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 V I +DP R A +A V + +K + G+ G + G++A +GN LP+ IP G + N+E + G G + R++G +A +++ + D +KLPS +++ C A IG+V L KAG H R P+VRG MNPV+HPHGGG Sbjct: 78 VTAIEYDPNRNARIALVQYEDG-----EKRYILQPAGLGVGDTIIAGEEAPYEIGNALPLYKIPLGTEIHNIELYAGRGGQMVRSAGAFAQLVA--KEGDYVTIKLPSKEVRMVRKECYATIGKVGNAEARNLKLGKAGRTRHLGR-----RPQVRGSVMNPVDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1 Query: 127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654 V I +DP R A +A V + ++ +A + + G V +KA + GN +P +P G ++ N+E G G +ARA+G YA + D +++L SG +++ C A +G V+ + + KAG HK P VRGV MNP++HPHGGG + G Sbjct: 78 VERIEYDPNRTAFIALVKYEDG-----EQAYILAPQRLAVGDTVVASQKADIKPGNAMPFSGMPIGTIIHNIEMKPGKGGQIARAAGTYAQFVGR--DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHK-----GVRPSVRGVVMNPIDHPHGGGEGRTSG 241
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1 Query: 115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654 + +V I +DP R A +A + + + +A + + G V + A + +GN LP++ IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG N + +R P VRGVAMNPV+HPHGGG + G Sbjct: 74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 60/181 (33.15%), Postives = 95/181 (52.49%), Query Frame = 1 Query: 115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAG-NAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654 + +V I +DP R A +A + + + +A + + G V + A + +GN LP++ IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG N + +R P VRGVAMNPV+HPHGGG + G Sbjct: 74 ISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWR------PHVRGVAMNPVDHPHGGGEGKTSG 241
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_POLSJ (50S ribosomal protein L2 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 66/210 (31.43%), Postives = 102/210 (48.57%), Query Frame = 1 Query: 7 IPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 I + KG G H HH + + F + V I +DP R A +A + + ++ IA G+ G + G +A + VGN LP+R+IP G+ + +E +G +AR++G A +++ + +V++ SG + I CRA IG+VA + + L KAG + P VRGV MNPV+HPHGGG Sbjct: 49 ITVRHKGGG-----HKHH------YRVVDFKRNKDAIPAKVERIEYDPNRTAHIALLCYADG-----ERTYIIAPRGLEVGATLISGSEAPIRVGNTLPIRNIPVGSTIHCIEMQIGKGAQIARSAGTSATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRRLGKAG-----VKRWMGIRPTVRGVVMNPVDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_MICAN (50S ribosomal protein L2 OS=Microcystis aeruginosa (strain NIES-843) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 61/170 (35.88%), Postives = 86/170 (50.59%), Query Frame = 1 Query: 127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 V I +DP R A +A + ++ +K IA G+ G V G+ A VGN LP+ IP G V N+E G G + RA+G +A +++ + D ++LPS ++I C A IG+V L KAG H+ + P VRG MNPV+HPHGGG Sbjct: 78 VAAIEYDPNRNARIALLFYKDG-----EKRYIIAPAGLGVGDTVIAGENAPFEVGNALPLSRIPLGTEVHNIELVPGRGGQMVRAAGGFAQVVA--KEGDYVTIRLPSKEVRMIRRECYATIGKVGNAEARNISLGKAGRTRHRGQ-----RPHVRGSVMNPVDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METPB (50S ribosomal protein L2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 65/185 (35.14%), Postives = 94/185 (50.81%), Query Frame = 1 Query: 127 VPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCW----PKVRGVAMNPVEHPHGGGNHQHIGHASTV 669 V I +DP R A +A +TF P KQ + +A + + G V G+ + GN P+ S+P G +V NVE +G G +AR++G+YA I+ D ++L SG ++++ C A +G V+ L KAG N W P RGVAMNPV+HPHGGG + G + V Sbjct: 79 VERIEYDPNRTAFIALITF----PDGKQSYI-LAPQRLSPGDKVVAGESVDVKPGNAGPIGSMPVGTIVHNVELKIGKGGAIARSAGNYAQIVGR--DQGYVTLRLNSGEQRLVHGQCFASVGAVSNPDHMNISLGKAGR---------NRWLGKRPHNRGVAMNPVDHPHGGGEGRTSGGRNPV 247
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HERA2 (50S ribosomal protein L2 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 1 Query: 13 PQRKGAGSVFKSH--THHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 P +K AG H T HR G ++ + F + + V I +DP R A +A + + +K IA G+ G + G A + VGN LP+ +IP G+ + N+E G G L R++G+ A +++ + + V+LPSG +++ C A +GQV + KAG + R P VRG AMNPV+HPHGGG Sbjct: 36 PLKKHAGRNNHGHITTRHRGGGHKRRYRLIDFKRKKFDIPAKVAGIEYDPNRSANIALLHYTDG-----EKRYIIAPLGLKVGDTLMAGPNAEIRVGNALPLANIPIGSQIHNIELTPGRGGQLVRSAGNTAQLMAR--EGNYATVRLPSGEMRMVHIKCMATLGQVGNVDHQNIMIGKAGRSRWLGR-----RPVVRGSAMNPVDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLPN (50S ribosomal protein L2 OS=Chlamydia pneumoniae GN=rplB PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 1 Query: 58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657 HR G A+ + + F + V + +DP R A +A +++ +K +A +G+ G V G+ + G + ++SIP G V N+E G L R++G A +I+ +P T +K+PSG +++ GCRA IG+V+ + KAG R P VRG AMNPV+HPHGGG +H G+ Sbjct: 64 HRGGGAKQLYRVVDFKRNKDGITAKVVTVEYDPNRSAYIALLSYEDG-----EKRYILAPKGIQRGDVVVSGEGSPFKPGCCMTLKSIPLGLSVHNIEMRPSSGGKLVRSAGLAAQVIAKSPGYVT--LKMPSGEFRMLNEGCRATIGEVSNADHNLRVDGKAGR-----RRWMGVRPTVRGTAMNPVDHPHGGGEGRHNGY 253
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RK2_OLIPU (50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila GN=rpl2-A PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 2.418e-19 Identity = 58/172 (33.72%), Postives = 88/172 (51.16%), Query Frame = 1 Query: 121 GVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E +G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ + P VRGV MNPV+HPHGGG Sbjct: 74 GRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGK-----RPVVRGVVMNPVDHPHGGG 233 The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bpback to top |