DY260187
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_LEPBA (50S ribosomal protein L2 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 65/197 (32.99%), Postives = 93/197 (47.21%), Query Frame = 1 Query: 76 QFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCW----PKVRGVAMNPVEHPHGGGNHQHIG 654 +F + F + V I +DP R A +A V + + +A G+ G + G A + +GN LP+ IP G V N+E H+G G +AR +G +AVI + D D +KLPS + + C A IG+++ + KAG N W PKVRGV MNPV+HP GGG + G Sbjct: 61 KFRIIDFKRNKFGIPATVKTIEYDPNRSAFIALVCYADG-----EYRYILAPNGLKVGDKIESGPAAEIKLGNTLPLDKIPAGTNVHNIELHIGKGGQIARTAGSFAVISA--KDGDYVSLKLPSSEIRKVRKECLATIGELSNKDHNLVIIGKAGR---------NRWLGKRPKVRGVVMNPVDHPLGGGEGRTSG 241
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 68/205 (33.17%), Postives = 99/205 (48.29%), Query Frame = 1 Query: 55 HHRKG-PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 663 HH G ++ + F + V I +DP R A +A + + + K +A +G+ G V G +A + VGN LP+ +IP G ++ N+E G G L R++G A ++ + T V+L SG ++I S CRA IG V ++ L KAG H P VRG MNP +HPHGGG Q +G S Sbjct: 53 HHGGGHKRKYRVIDFKRTTDNVVAKVATIEYDPNRTANIALIVYSNGV-----KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRHM-----GIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CLOTE (50S ribosomal protein L2 OS=Clostridium tetani GN=rplB PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 1 Query: 25 GAGSVFKSHTHHRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTV 669 G S K HR G A+ + + F + V I +DP R A +A V + +K IA +G+ G + G A + GN LP+++IP G V N+E G L R++G A +++ + + +KLPSG + + CRA IG V+ + KAG + K P VRG AMNP +HPHGGG IG +S V Sbjct: 42 GRNSQGKITVRHRGGGAKRKYRIIDFKRDKDGIPAKVATIEYDPNRTAFIALVVYTDG-----EKRYIIAPQGLKVGDVIVSGPDADIKAGNCLPIKNIPVGTFVHNIELASGKGAQLVRSAGGSAQLMA--KEGNYATIKLPSGETRYVRIECRATIGTVSNVKHEIMSIGKAGR-----KRKMGFRPTVRGSAMNPCDHPHGGGEGRTPIGMSSPV 247
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLCH (50S ribosomal protein L2 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 65/225 (28.89%), Postives = 103/225 (45.78%), Query Frame = 1 Query: 25 GAGSVFKSHTHHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 693 G S + + HR G + + F + V I +DP R A +A + + +K +A +G+ G V G+K + GN +P+++IP G + N+E G G + R++G +AV+ + + D +KLPSG + + CRA IG + L KAG + P+ RG+AMNPV+HP GGG + +P GQ Sbjct: 42 GRNSAGRKTSRHRGGGHKRHYRIIDFKRNKDGIVATVAAIEYDPNRSARIALLHYIDG-----EKRYILAPKGLKVGDKVESGEKVEIKTGNTMPMKNIPLGTDIHNIEMKAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVIGNADHENIDLGKAGRSRWL-----GIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLAB (50S ribosomal protein L2 OS=Chlamydophila abortus GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 1 Query: 58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657 HR G A+ + + F ++ V + +DP R A +A +++ +K +A +G+ G V G+ + +G + ++S+P G+ V N+E G L R++G A +I+ P T +K+PSG +++ GCRA IG+V+ KAG K P VRG AMNPV+HPHGGG +H G+ Sbjct: 64 HRGGGAKRLYRVIDFKRNKDGIEAKVVSVEYDPNRSAYIALLSYADG-----EKRYILAPKGIKRGDQVISGEGSPFKLGCCMTLKSMPLGSTVHNIEMRPHSGGKLVRSAGLAAQVIAKTPGYVT--LKMPSGEFRMLNEGCRATIGEVSNSDHNLCVDGKAGRKRWK-----GIRPTVRGTAMNPVDHPHGGGEGRHNGY 253
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CARHZ (50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 71/215 (33.02%), Postives = 100/215 (46.51%), Query Frame = 1 Query: 4 VIPPQRKGAGSVFKSH--THHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 +I P +K AG + HR G + + F + V I +DP R A +A + + +K IA G+ G + G A + VGN LP+ +IP G +V N+E + G G L RA+G A ++ + ++LPSG + + CRA IGQV + KAG A P VRGV MNPV+HPHGGG Sbjct: 33 LIVPLKKHAGRNNQGRLTVRHRGGGHKRMYRIIDFKRNKDGIPAKVVAIEYDPNRTARIALLAYADG-----EKRYIIAPHGLKVGDVLMSGPDADIKVGNALPLANIPVGTLVHNIELYPGKGGQLVRAAGTAAQLL--GKEGRYAILRLPSGEMRKVLLECRATIGQVGNLEHENITIGKAGRARWL-----GIRPTVRGVVMNPVDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 67/209 (32.06%), Postives = 100/209 (47.85%), Query Frame = 1 Query: 16 QRKGAGSVFKSHTHHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636 ++ G + K H+ G Q+ + F + G V + +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV + KAG + K P VRG MNP +HPHGGG Sbjct: 39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ARTCA (50S ribosomal protein L2 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 75/234 (32.05%), Postives = 113/234 (48.29%), Query Frame = 1 Query: 13 PQRKGAGSVFKSHTHHRKG--PAQFPSLHFG--ERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 702 P++ G + K T H+ G Q+ + F +++G + V EI +DP R A +A + + K IA + G FV G A + GN LP+R+IP G VV VE G + R++G +++ + +++LPSG + + CRA +G+V ++ KAG K P VRGVAMNPV+HPHGGG + G + V P GQ+ G Sbjct: 38 PKKGGRNNTGKITTRHKGGGHKRQYRLIDFRRHDKDG-VDARVAEIEYDPNRTARIALLHYVDG-----TKRYIIAPNKLSQGDFVEAGPNADIKPGNNLPLRNIPVGTVVHAVELRPGGGAKMGRSAGASIQLVAR--EGRFAQLRLPSGEIRNVDVRCRATVGEVGNAEQSNINWGKAGRMRWK-----GVRPTVRGVAMNPVDHPHGGGEGKTSGGRNPVN---PNGQREG 255
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ANAPZ (50S ribosomal protein L2 OS=Anaplasma phagocytophilum (strain HZ) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 124 VVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 669 VV + +DP R A LA + + + +A G+ + G + ++ GN L + IP G V NVE VG G++ARA+G YA ++ D ++L SG + I S CRA +G V+ L KAG + PKVRGVAMNPV+HPHGGG + G ++V Sbjct: 77 VVKRLEYDPNRTAFLALIQYEDG-----ELSYILAPSGLKVDDVIMSGAGSDVLPGNCLKLSMIPSGTFVHNVEMKVGGGGIIARAAGSYAQVMGR--DGAYVMLRLGSGEVRRILSVCRATVGVVSNLDNRNIKLGKAGRSRWL-----GLRPKVRGVAMNPVDHPHGGGEGKTSGGRNSV 246
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ALISL (50S ribosomal protein L2 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19 Identity = 65/180 (36.11%), Postives = 91/180 (50.56%), Query Frame = 1 Query: 115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654 + +V + +DP R A +A V F ++ IA +G+ G V G A + GN LP+R+IP G+ V VE G +AR++G YA II+ D ++L SG + + S RA IG+V + L KAG + P VRGVAMNPV+HPHGGG + G Sbjct: 74 IPAIVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGLKAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQVARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRWR-----GVRPTVRGVAMNPVDHPHGGGEGRTSG 241 The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bpback to top |