DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_LEPBA (50S ribosomal protein L2 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 65/197 (32.99%), Postives = 93/197 (47.21%), Query Frame = 1
Query:   76 QFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCW----PKVRGVAMNPVEHPHGGGNHQHIG 654
            +F  + F      +   V  I +DP R A +A V +        +    +A  G+  G  +  G  A + +GN LP+  IP G  V N+E H+G  G +AR +G +AVI +   D D   +KLPS   + +   C A IG+++        + KAG          N W    PKVRGV MNPV+HP GGG  +  G
Sbjct:   61 KFRIIDFKRNKFGIPATVKTIEYDPNRSAFIALVCYADG-----EYRYILAPNGLKVGDKIESGPAAEIKLGNTLPLDKIPAGTNVHNIELHIGKGGQIARTAGSFAVISA--KDGDYVSLKLPSSEIRKVRKECLATIGELSNKDHNLVIIGKAGR---------NRWLGKRPKVRGVVMNPVDHPLGGGEGRTSG 241          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_LACLA (50S ribosomal protein L2 OS=Lactococcus lactis subsp. lactis GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 68/205 (33.17%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   55 HHRKG-PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG-NHQHIGHAS 663
            HH  G   ++  + F      +   V  I +DP R A +A + + +       K   +A +G+  G  V  G +A + VGN LP+ +IP G ++ N+E   G  G L R++G  A ++    +   T V+L SG  ++I S CRA IG V    ++   L KAG   H         P VRG  MNP +HPHGGG   Q +G  S
Sbjct:   53 HHGGGHKRKYRVIDFKRTTDNVVAKVATIEYDPNRTANIALIVYSNGV-----KSYILAPKGLEVGMTVVSGPEADIKVGNALPLANIPVGTLIHNIELKPGKGGQLVRSAGASAQVL--GSEGKYTLVRLQSGEVRMILSTCRATIGVVGNEQQSLINLGKAGRTRHM-----GIRPTVRGSVMNPNDHPHGGGEGRQPVGRKS 245          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CLOTE (50S ribosomal protein L2 OS=Clostridium tetani GN=rplB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 71/218 (32.57%), Postives = 102/218 (46.79%), Query Frame = 1
Query:   25 GAGSVFKSHTHHRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG-NHQHIGHASTV 669
            G  S  K    HR G A+  +  + F      +   V  I +DP R A +A V +        +K   IA +G+  G  +  G  A +  GN LP+++IP G  V N+E   G    L R++G  A +++   + +   +KLPSG  + +   CRA IG V+        + KAG      + K    P VRG AMNP +HPHGGG     IG +S V
Sbjct:   42 GRNSQGKITVRHRGGGAKRKYRIIDFKRDKDGIPAKVATIEYDPNRTAFIALVVYTDG-----EKRYIIAPQGLKVGDVIVSGPDADIKAGNCLPIKNIPVGTFVHNIELASGKGAQLVRSAGGSAQLMA--KEGNYATIKLPSGETRYVRIECRATIGTVSNVKHEIMSIGKAGR-----KRKMGFRPTVRGSAMNPCDHPHGGGEGRTPIGMSSPV 247          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLCH (50S ribosomal protein L2 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 65/225 (28.89%), Postives = 103/225 (45.78%), Query Frame = 1
Query:   25 GAGSVFKSHTHHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQ 693
            G  S  +  + HR G     +  + F      +   V  I +DP R A +A + +        +K   +A +G+  G  V  G+K  +  GN +P+++IP G  + N+E   G  G + R++G +AV+ +   + D   +KLPSG  + +   CRA IG +         L KAG +           P+ RG+AMNPV+HP GGG  +           +P GQ
Sbjct:   42 GRNSAGRKTSRHRGGGHKRHYRIIDFKRNKDGIVATVAAIEYDPNRSARIALLHYIDG-----EKRYILAPKGLKVGDKVESGEKVEIKTGNTMPMKNIPLGTDIHNIEMKAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVIGNADHENIDLGKAGRSRWL-----GIRPQTRGMAMNPVDHPMGGGEGKSKSGGGRKHPKSPWGQ 254          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CHLAB (50S ribosomal protein L2 OS=Chlamydophila abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 64/202 (31.68%), Postives = 102/202 (50.50%), Query Frame = 1
Query:   58 HRKGPAQ--FPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGH 657
            HR G A+  +  + F      ++  V  + +DP R A +A +++        +K   +A +G+  G  V  G+ +   +G  + ++S+P G+ V N+E      G L R++G  A +I+  P   T  +K+PSG  +++  GCRA IG+V+          KAG    K        P VRG AMNPV+HPHGGG  +H G+
Sbjct:   64 HRGGGAKRLYRVIDFKRNKDGIEAKVVSVEYDPNRSAYIALLSYADG-----EKRYILAPKGIKRGDQVISGEGSPFKLGCCMTLKSMPLGSTVHNIEMRPHSGGKLVRSAGLAAQVIAKTPGYVT--LKMPSGEFRMLNEGCRATIGEVSNSDHNLCVDGKAGRKRWK-----GIRPTVRGTAMNPVDHPHGGGEGRHNGY 253          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CARHZ (50S ribosomal protein L2 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 71/215 (33.02%), Postives = 100/215 (46.51%), Query Frame = 1
Query:    4 VIPPQRKGAGSVFKSH--THHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            +I P +K AG   +      HR G     +  + F      +   V  I +DP R A +A + +        +K   IA  G+  G  +  G  A + VGN LP+ +IP G +V N+E + G  G L RA+G  A ++    +     ++LPSG  + +   CRA IGQV         + KAG A           P VRGV MNPV+HPHGGG
Sbjct:   33 LIVPLKKHAGRNNQGRLTVRHRGGGHKRMYRIIDFKRNKDGIPAKVVAIEYDPNRTARIALLAYADG-----EKRYIIAPHGLKVGDVLMSGPDADIKVGNALPLANIPVGTLVHNIELYPGKGGQLVRAAGTAAQLL--GKEGRYAILRLPSGEMRKVLLECRATIGQVGNLEHENITIGKAGRARWL-----GIRPTVRGVVMNPVDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 67/209 (32.06%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   16 QRKGAGSVFKSHTHHRKG--PAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGG 636
            ++ G  +  K    H+ G    Q+  + F      + G V  + +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV         + KAG +  K        P VRG  MNP +HPHGGG
Sbjct:   39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWK-----GIRPTVRGSVMNPNDHPHGGG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ARTCA (50S ribosomal protein L2 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 75/234 (32.05%), Postives = 113/234 (48.29%), Query Frame = 1
Query:   13 PQRKGAGSVFKSHTHHRKG--PAQFPSLHFG--ERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 702
            P++ G  +  K  T H+ G    Q+  + F   +++G +   V EI +DP R A +A + +         K   IA   +  G FV  G  A +  GN LP+R+IP G VV  VE   G    + R++G    +++   +    +++LPSG  + +   CRA +G+V    ++     KAG    K        P VRGVAMNPV+HPHGGG  +  G  + V    P GQ+ G
Sbjct:   38 PKKGGRNNTGKITTRHKGGGHKRQYRLIDFRRHDKDG-VDARVAEIEYDPNRTARIALLHYVDG-----TKRYIIAPNKLSQGDFVEAGPNADIKPGNNLPLRNIPVGTVVHAVELRPGGGAKMGRSAGASIQLVAR--EGRFAQLRLPSGEIRNVDVRCRATVGEVGNAEQSNINWGKAGRMRWK-----GVRPTVRGVAMNPVDHPHGGGEGKTSGGRNPVN---PNGQREG 255          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ANAPZ (50S ribosomal protein L2 OS=Anaplasma phagocytophilum (strain HZ) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 64/182 (35.16%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  124 VVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV 669
            VV  + +DP R A LA + +        +    +A  G+     +  G  + ++ GN L +  IP G  V NVE  VG  G++ARA+G YA ++    D     ++L SG  + I S CRA +G V+        L KAG +           PKVRGVAMNPV+HPHGGG  +  G  ++V
Sbjct:   77 VVKRLEYDPNRTAFLALIQYEDG-----ELSYILAPSGLKVDDVIMSGAGSDVLPGNCLKLSMIPSGTFVHNVEMKVGGGGIIARAAGSYAQVMGR--DGAYVMLRLGSGEVRRILSVCRATVGVVSNLDNRNIKLGKAGRSRWL-----GLRPKVRGVAMNPVDHPHGGGEGKTSGGRNSV 246          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ALISL (50S ribosomal protein L2 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.159e-19
Identity = 65/180 (36.11%), Postives = 91/180 (50.56%), Query Frame = 1
Query:  115 LKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIG 654
            +  +V  + +DP R A +A V F        ++   IA +G+  G  V  G  A +  GN LP+R+IP G+ V  VE   G    +AR++G YA II+   D     ++L SG  + + S  RA IG+V       + L KAG    +        P VRGVAMNPV+HPHGGG  +  G
Sbjct:   74 IPAIVERLEYDPNRSANIALVLFADG-----ERRYIIAPKGLKAGDTVQSGVDAPIKAGNCLPLRNIPVGSTVHCVELKPGKGAQVARSAGAYAQIIAR--DGAYVTLRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRWR-----GVRPTVRGVAMNPVDHPHGGGEGRTSG 241          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LEPBA3.159e-1932.9950S ribosomal protein L2 OS=Leptospira biflexa ser... [more]
RL2_LACLA3.159e-1933.1750S ribosomal protein L2 OS=Lactococcus lactis sub... [more]
RL2_CLOTE3.159e-1932.5750S ribosomal protein L2 OS=Clostridium tetani GN=... [more]
RL2_CHLCH3.159e-1928.8950S ribosomal protein L2 OS=Chlorobium chlorochrom... [more]
RL2_CHLAB3.159e-1931.6850S ribosomal protein L2 OS=Chlamydophila abortus ... [more]
RL2_CARHZ3.159e-1933.0250S ribosomal protein L2 OS=Carboxydothermus hydro... [more]
RL2_BACSU3.159e-1932.0650S ribosomal protein L2 OS=Bacillus subtilis GN=r... [more]
RL2_ARTCA3.159e-1932.0550S ribosomal protein L2 OS=Arthrobacter chlorophe... [more]
RL2_ANAPZ3.159e-1935.1650S ribosomal protein L2 OS=Anaplasma phagocytophi... [more]
RL2_ALISL3.159e-1936.1150S ribosomal protein L2 OS=Aliivibrio salmonicida... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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