DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.028e-50
Identity = 109/238 (45.80%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR+G G+  ++S +H  +G   + S    ER G L G+V +IIHDPGR AP+A V F +      +++L +A E +     + CG  A++  GN LP+  IPEG  V N+E++ GD G   R+SG YA +I+H  D D T +++PSG  K      RA +G VAGGGR EKP  KAGN YH  + K      VRGVAMN V+HPHGGGN QH G  +T+ R AP G+KVG   A+RTG
Sbjct:    8 QRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNG-----EEKLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSIAAKRTG 238          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.902e-50
Identity = 108/241 (44.81%), Postives = 139/241 (57.68%), Query Frame = 1
Query:    7 IPPQRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            I PQR G G   +++ +H  +G  +       E+ G + G V E++HDP R AP+ARV F        ++ L +  EG   G  + CG  A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H  D   T V+LPSG  +     CRA IG ++GGG+ EKP  KAG  Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG   AR+TG
Sbjct:    5 IRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHIAARKTG 238          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.007e-49
Identity = 112/243 (46.09%), Postives = 140/243 (57.61%), Query Frame = 1
Query:    1 RVIPPQRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R I  QR+G G   F++ +H  K       L   E    + G +  I HDP R APLA + F         + L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE + GD G  ARASG  A +++H  D D   V+LPSG  K +   CRA IG VAGGGRTEKP  KAGN YHK + +   +P+VRGVAMN V+HP GGG  QH G   +V RDAPPG+KVG   ++RTG
Sbjct:    3 RRIQGQRRGRGGPTFRAPSHRYKAELSHKKL---EDVDTITGEIVGIEHDPARSAPLAEIEFEDD-----DRRLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTH--DRDVAVVQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAVDHPFGGGGRQHPGQPKSVSRDAPPGRKVGDIASKRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METS3 (50S ribosomal protein L2P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.315e-49
Identity = 107/238 (44.96%), Postives = 144/238 (60.50%), Query Frame = 1
Query:   16 QRKGAGSVFKSHTHHR-KGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR+G G+       HR K   ++ S    E+ G +KG+V +I+HDP R AP+A V F +      +K+  +A E +     + CG  A +  GN LP+  IPEG  + ++E+  GD G   R+SG YA +I+H  D + + V+LPSG  K +   CRA IG VAGGGR EKP  KAGN +H ++ K   +  VRGVAMN V+HPHGGGN QH G  +TV R APPG+KVG   A+RTG
Sbjct:    8 QRRGRGTPAHRVASHRFKDKIRYRSYDALEKEGSIKGIVTDIVHDPARTAPIAEVKFENG-----EKKFILAPESIQIDDEIECGISAPIKFGNTLPLAEIPEGTPIYDIENTPGDGGRFVRSSGTYASLITH--DANQSVVELPSGELKYLNPRCRASIGVVAGGGRKEKPFLKAGNRWHAYKAKGKKFMTVRGVAMNAVDHPHGGGNRQHPGRPTTVSRHAPPGRKVGSIAAKRTG 238          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 196.823 bits (499), Expect = 1.717e-49
Identity = 110/243 (45.27%), Postives = 142/243 (58.44%), Query Frame = 1
Query:    1 RVIPPQRKGAG-SVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R I  QR+G G S F++ +H  K   +   +  G+    + G V +I HDP R AP+A V F         + L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   VKLPSG  K +   CRA IG VAGGGRT+KP  KAGN +HK + +   WP VRGVAMN V+HP GGG  QH G   ++ R+APPG+KVG   ++RTG
Sbjct:    3 RRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAAVEFEDG-----DRRLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_NATPD (50S ribosomal protein L2P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.996e-49
Identity = 110/243 (45.27%), Postives = 142/243 (58.44%), Query Frame = 1
Query:    1 RVIPPQRKGAG-SVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R I  QR+G G S F++ +H  K      ++   E +  + G V +I HDP R APLA V F         + L +A EG+  G  +  G  A +  GN +P+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   V+LPSG  + +   CRA IG VAGGGRTEKP  KAGN +HK + +   WP+VRGVAMN V+HP GGG  QH G   +V RD PPG+KVG   ++RTG
Sbjct:    3 RRILGQRRGRGTSTFRAPSHRYKADLSHRNV---EESDLVTGEVVDIEHDPARSAPLADVQFDDG-----DRRLVLAPEGVTVGDEIQIGVSAEIAPGNTMPLAEIPEGVPVCNVERQPGDGGKFARASGVSATLLTH--DRNAAVVQLPSGEMRRLSPECRATIGVVAGGGRTEKPFVKAGNKHHKMKSRGGKWPRVRGVAMNAVDHPFGGGGRQHPGKPKSVSRDTPPGRKVGDIASKRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.525e-49
Identity = 111/238 (46.64%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR+G G+  F++ +H  +G  ++  L+  +    L G V EI+HDPGR AP+ARV F +       ++L IA EG+  G+ +  G  A + +GN LP+  IPEG+ V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP+ KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG   ARRTG
Sbjct:    8 QRRGKGTTTFRAPSHRYRGAVRYVPLNLTKEKT-LVGKVVEILHDPGRTAPVARVKFENGM-----EKLIIAPEGILVGEEIAIGPNAPIKIGNTLPLAMIPEGSYVYDIEGTPGDGGKYVRAGGVYALVVSR--EKDKVIVQLPSGELKQFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHIAARRTG 236          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.230e-48
Identity = 108/242 (44.63%), Postives = 143/242 (59.09%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GS F+S +  R GP ++P    G      +G+V EI+H+PG  AP+A++   +   +        AAEG+Y GQ +  G  A   VGNVLP+  IPEG +V NVE   GD G  AR+ G YA++I   P+ + T V+LPSG    + +  RA IG VAGGGR EKP  KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG   +R TG
Sbjct:    4 RILVQRRGRGGSQFRSPSWKRDGPVRYPPNISG------RGIVVEILHEPGLNAPVAKIRMENGVEFFNY-----AAEGLYVGQVIQVGPDAPPAVGNVLPLGKIPEGTMVFNVEKRFGDGGKFARSGGTYALVIGQRPEENKTIVRLPSGRVIEVDARGRATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFIGSRCTG 232          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG  AP+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG  AP+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METST2.028e-5045.8050S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL2_METKA5.902e-5044.8150S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_HALLT1.007e-4946.0950S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_METS31.315e-4944.9650S ribosomal protein L2P OS=Methanobrevibacter sm... [more]
RL2_HALMA1.717e-4945.2750S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_NATPD4.996e-4945.2750S ribosomal protein L2P OS=Natronomonas pharaoni... [more]
RL2_THEON6.525e-4946.6450S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_PYRCJ4.230e-4844.6350S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_SULIY5.524e-4844.5450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM5.524e-4844.5450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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