DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG  AP+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG  AP+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.524e-48
Identity = 106/238 (44.54%), Postives = 145/238 (60.92%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG  AP+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 9.422e-48
Identity = 108/242 (44.63%), Postives = 145/242 (59.92%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GS F+S +  R GP ++P L  G  +G  KG V +I+H+PG  AP+A++   +   +        AAEG+Y GQ V  GK A+   GN++ +  IPEG ++ NVE   GD G  ARA G YAV+I   P+ + T ++LPSG    + S  RA +G VAGGGR EKP  KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG   +R TG
Sbjct:    4 RILVQRRGRGGSQFRSPSWKRDGPVRYPPL--GVISG--KGYVVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFIGSRCTG 234          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.607e-47
Identity = 105/238 (44.12%), Postives = 144/238 (60.50%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F+S +  R G  ++P++      G+L G V +I+H+PG   P+A +   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.676e-47
Identity = 97/242 (40.08%), Postives = 145/242 (59.92%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R+I   R      +++ +H  K   + P +   + N  ++G V  + HDP R AP+A+V F        ++ L +A+EG+  G  + CG  A +  GN++P+  +PEG  +CN+E    D G   R+SG YA +++H  +++ T V +PSG  K +   CRA++G VAGGGR ++P  KAG  YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVG   ARRTG
Sbjct:    4 RIISQNRGRGTPTYRAPSHKYKAELRHPRV---DENTSIQGKVINLEHDPARSAPIAKVVFE-----TGEERLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.107e-47
Identity = 104/242 (42.98%), Postives = 137/242 (56.61%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R+I   R      +++ +H  K  A+   L F  ++  +   V +I HD  R  P+A V           +   +A EG+ TG  VY G    +  GN+  +++IPEG  VCN+E   GD G   RASG +  ++S   D     V++PSG +K     CRAMIG VAGGGRT+KP  KAG  YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG   ARRTG
Sbjct:    4 RIISQNRGKGTPTYRAPSHRYKTDAKL--LRF--KDEVVAAKVIDIQHDSARNGPVALVKLPDG-----SETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSREADK--VLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSIAARRTG 234          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.977e-47
Identity = 100/239 (41.84%), Postives = 146/239 (61.09%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            Q +G G+  +++ +H  K   + P +   + N  L+G V +I HDP R AP+A+V F +       +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CN+E    D G   R+SG YA +++H P    T V +PSG  K +   CRA++G VAGGGR ++P  KAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVG   ARRTG
Sbjct:    8 QNRGRGTPTYRAPSHKYKADLRHPRV---DENTSLQGEVIDIEHDPARSAPIAKVAFENG------EELFLLASEGVAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNIESKPNDGGKFVRSSGVYATVVTHEPTR--TAVSMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.777e-46
Identity = 104/238 (43.70%), Postives = 143/238 (60.08%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G GS  F++    R G  ++P++      G+  G V +I+H+PG  AP+A V   +   ++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   ++LPS   K + +  RA +G VAGGG  EKPL KAG  Y K++VK   WP VRGVAMN V+HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRLPSDKIKAVSNKARATVGIVAGGGVIEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVVDHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.777e-46
Identity = 106/238 (44.54%), Postives = 141/238 (59.24%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G G + F+S +  R GPA++P++      G  KG + +I+H+PG  AP+ +V   +   +        A +G+  GQ +  GK AT+  GN++ V  +PEG V+CNVE   GD G  ARA+G YAVI       +   +KL S     +    RA +G +AGGG  EKPL KAGN Y K+RV+   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG   +RRTG
Sbjct:    8 QRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFY-----IPAVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVI--SGKAGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIASRRTG 233          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SULIL5.524e-4844.5450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK5.524e-4844.5450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA5.524e-4844.5450S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_PYRAE9.422e-4844.6350S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_SULIN1.607e-4744.1250S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_METBF4.676e-4740.0850S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_ARCFU6.107e-4742.9850S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_METMA7.977e-4741.8450S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_SULSO1.777e-4643.7050S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_SULAC1.777e-4644.5450S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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