DY260187

Overview
NameDY260187
Unique NameDY260187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.321e-46
Identity = 103/242 (42.56%), Postives = 141/242 (58.26%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GS F+S +  R GP ++P L+     GY    V EI+H+PG  AP+AR+   +   ++       AAEG+Y GQ +  G  A    GN++ +  +PEG +V NVE   GD G  ARA G YAV++   P+ + T ++LPSG    + S  RA +G VAGGGR EKP  KAG  YH+ + K   +P VRG AM+P  HPHGGG+H   G  + V + APPGQKVG   +R TG
Sbjct:    4 RILVQRRGRGGSQFRSPSWKRDGPVRYPPLNVTVGRGY----VVEILHEPGLNAPVARIRLENGVEFLN-----FAAEGLYVGQEIEVGDLAAPKTGNIVILGRVPEGTMVFNVEKRAGDGGKFARAGGTYAVVVGQKPEENKTIIRLPSGKVVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSHPKGG--TPVPKTAPPGQKVGFYGSRCTG 234          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 6.753e-46
Identity = 104/238 (43.70%), Postives = 139/238 (58.40%), Query Frame = 1
Query:   16 QRKGAGSV-FKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G G + F+S +  R G A+ P++      G   G V +I+H+PG  APLA +       +        + +G+  GQ +  GK A +  GN++ V ++PEG ++ N+E   GD G  AR++G Y V++      D   VKL S     + S  RA++G VAGGG TEKPL KAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG   ARRTG
Sbjct:    8 QRAGRGGINFRSPSWRRVGKAKIPNIE-----GEHIGKVIDIVHNPGTNAPLALIKLDDGTKFYVP-----SVQGLVVGQKIQIGKNAAISNGNIVEVGNVPEGTIISNIEKTRGDGGKFARSAGTYGVVVGKT--GDKVLVKLSSEKIAQVSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHIAARRTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.819e-46
Identity = 103/242 (42.56%), Postives = 140/242 (57.85%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GS F+S +  R GP ++  L      GY    V E++H+PG  AP+AR+       +        AAEG+Y GQ +  G  AT   GN++ +  IPEG ++ NVE   GD G  AR+SG YAV++   P+ + T ++LPSG    + +  RA +G VAGGGR EKP  KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG   +R TG
Sbjct:    4 RILVQRRGRGGSQFRSPSWKRDGPVRYLPLEATSGRGY----VVELLHEPGLNAPVARIVTESGAEFFNY-----AAEGLYVGQVIEMGSGATPKAGNIMILGEIPEGTMIFNVEKRAGDGGKYARSSGTYAVVVGQKPEENKTIIRLPSGRVIEVDARGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFIGSRCTG 234          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.152e-45
Identity = 103/242 (42.56%), Postives = 143/242 (59.09%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GS F+S +  R+GP ++P L    R     G V +IIH PG  AP+A++   +   ++       AAEG+Y GQ +  G+ A+   GNV+ +   PEG +V NVE   GD G  AR+ G YAV++   P+ + T V+LPSG    + +  RA +G VAGGGR EKP+ KAG  Y++ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG   +R TG
Sbjct:    4 RILVQRRGRGGSQFRSPSWRREGPVRYPPLGTAGR-----GYVVDIIHVPGLNAPVAKIRLENGLEFLNY-----AAEGLYVGQEIEIGEAASPKTGNVVVLGKAPEGTMVFNVEKRPGDGGKFARSGGTYAVVVGQKPEENKTIVRLPSGRTMEVDARGRATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAPPGQKVGFIGSRCTG 233          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.504e-45
Identity = 100/238 (42.02%), Postives = 138/238 (57.98%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            Q +G GS  +++ +H  K   + P +   +    L G V  I HDP R AP+A V F +      +K+  +  EG+  G+ + CG  A +  GN LP+  IPEG  +CN+E    D G  AR+SG YA ++S   +     V++PSG  K     CRA IG VAGGGR ++P  KAG  YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+APPG+KVG   ARRTG
Sbjct:    8 QNRGRGSPTYRAPSHKYKAELKHPRV---DEESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLKWFHPKCRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHIAARRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.566e-45
Identity = 99/239 (41.42%), Postives = 143/239 (59.83%), Query Frame = 1
Query:   16 QRKGAGS-VFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            Q +G G+  +++ +H  K   + P +   + N  L+G V  I HDP R AP+A+V F +       +ELF+ A+EG+  G  + CG  A +  GN++P+ ++PEG  +CNVE    D G   R+SG YA +++H      T V +PSG  K +   CRA++G VAG GR ++P  KAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVG   ARRTG
Sbjct:    8 QNRGRGTPTYRAPSHKYKADLRHPRV---DENSSLRGEVVGIEHDPARSAPIAKVAFENG------EELFLLASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTHEATR--TAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLIAARRTG 235          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_THEPD (50S ribosomal protein L2P OS=Thermofilum pendens (strain Hrk 5) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.377e-45
Identity = 105/243 (43.21%), Postives = 147/243 (60.49%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGE-RNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R++  +R   GSVF++    R GPA++P  +  E +N  L GVV +++H+PGRGAPLA V F         K   I  EG+  GQ +Y G KA  ++G+++ + ++PEG +V N+E   GD G LAR+SG YA++++H+  N  T ++LPS   K + S  RA IG VA GGR EKP+ KAG  +H  R K   +P VRG AM+   HP GGG+H      +   R+APPG+KVG    RRTG
Sbjct:    4 RLLVQRRGRGGSVFRNPGWKRLGPARYPPYNPEEFKNKVLVGVVKDLLHEPGRGAPLALVEFEDG-----TKMYMIPPEGLAVGQKIYYGAKAPAVLGSIVEIGNVPEGTIVSNIEIRPGDGGKLARSSGAYALVLAHS--NGKTLIQLPSKKVKEVSSEARATIGMVAAGGRIEKPMLKAGKMWHWSRAKSFKYPTVRGKAMSAYAHPAGGGHHPK--GLTPAPRNAPPGRKVGHIAPRRTG 237          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.377e-45
Identity = 103/239 (43.10%), Postives = 143/239 (59.83%), Query Frame = 1
Query:   16 QRKG-AGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            QR G  GS F+S +  R  P ++      +    ++G++ E++H  G  AP   V   +       +E+++ A EG+Y G+ +  G  A +  GNV+P+  IPEG +VCN+E  VGD G  AR+SG Y V++ H   + TT V+LPSG    + S  RA IG VAGGGR EKP  KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG   ++ TG
Sbjct:    8 QRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENG------EEMYLPAVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIHR--DSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVGFYGSKCTG 236          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.273e-44
Identity = 90/205 (43.90%), Postives = 136/205 (66.34%), Query Frame = 1
Query:  118 KGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFI-AAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGPN*ARRTG 726
            +G V +I+H+  RGAP+A ++F       K+ +  + A+EGMYTGQ +  G  A + +GN+  ++++PEG  V +VE   GD G  A  +G Y+++++H  + + T +K+PSG K  + S CR ++G VAGGG  +KPL KA  A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV ++D    QK+G   ARRTG
Sbjct:   34 EGEVIDIVHERSRGAPVAIISF-------KEDDCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLVGARRTG 231          
BLAST of DY260187 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.273e-44
Identity = 100/242 (41.32%), Postives = 130/242 (53.72%), Query Frame = 1
Query:    1 RVIPPQRKGAGSVFKSHTHHRKGPAQFPSLHFGERNGYLKGVVPEIIHDPGRGAPLARVTFRHPFPYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLPKAGNAYHKFRVKPNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGPN*ARRTG 726
            R+    R   G  +++ +H  K   +    H G     ++GV+ +I HDP R  P+A V          +K   +  EG+  G  V  G +A +  GN LP+  IP G+ +CN+E   GD G   RASG  A+II    D     VK+PSG  K   S C A +G VAGGGR EKP  KAG  +HK + +   WP+VRGVAMN ++HP GGG HQH G   TV R   PG+KVG   ARRTG
Sbjct:    4 RIKTQNRGRGGPTYRAPSHQYKAELK----HLGNDKVTVRGVIIDIEHDPARHTPIALVRLEGE----GKKVYLLVTEGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSVAARRTG 235          
The following BLAST results are available for this feature:
BLAST of DY260187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_PYRIL2.321e-4642.5650S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]
RL2_SULTO6.753e-4643.7050S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_PYRAR8.819e-4642.5650S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_THENV1.152e-4542.5650S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_METBU1.504e-4542.0250S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_METAC2.566e-4541.4250S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_THEPD4.377e-4543.2150S ribosomal protein L2P OS=Thermofilum pendens (... [more]
RL2_CALMQ4.377e-4543.1050S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL8_ENCCU1.273e-4443.9060S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_METPE1.273e-4441.3250S ribosomal protein L2P OS=Methanosphaerula palu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260187 ID=DY260187; Name=DY260187; organism=Citrus clementina; type=EST; length=1040bp
CGTGTGATTCCCCCTCAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCA
CACCCACCACCGTAAGGGTCCGGCCCAGTTCCCCAGCCTCCACTTCGGTG
AGCGTAATGGTTACCTCAAGGGTGTCGTCCCAGAGATTATTCACGATCCG
GGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCCCTA
CATGAAACAAAAGGAGCTTTTCATTGCCGCTGAGGGTATGTACACGGGTC
AGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTG
CCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCA
TGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTA
TCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCT
GGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGGT
TGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCCCAAAGCTGGTAATGCAT
ACCACAAATTCAGAGTGAAGCCAAACTGCTGGCCTAAGGTGCGTGGTGTG
GCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACAT
TGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTG
GTCCTAATTGAGCCAGGAGGACCGGTCCGCTCAAAGAAAAGCTGCTGCCA
CCGCCGCCAAGGCCCACAAGGCTTAAATCCTTTGTGTTACCACAAATCCT
CCCCCCAATCGCGAACCGTCCTTTTACTTTCCCTGCCGGCTCATTACCCT
GGAAAAAATTTGTTGGAAATTTGGATCCCCGGGGAAGAACCCCGATGGTT
AAATTAAGTTTGCCTTAAAAGTTAAACCTTAAATTTCCCCCCAACCCCCA
AACCTTTATTTAAATTTTGAAAATTTTTGGAAAATAATAAAAGGAAACCC
CCCCCCCCCAAATAACATTAAAGGGAAAAGGGCTATTTTT
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