DY260195

Overview
NameDY260195
Unique NameDY260195
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1170
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 3.143e-42
Identity = 103/250 (41.20%), Postives = 131/250 (52.40%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY           G      P    S   +            Q PK SCH V T +W PSA+D  AGRVPG      +++  GL    G DD V    +G +  +   LG+    + DC
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY----GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIIN-GGLECGHGEDDRVA-DRIGFYKRYCDILGVSYDANLDC 318          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.560e-41
Identity = 89/189 (47.09%), Postives = 113/189 (59.79%), Query Frame = 1
Query:  160 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPG 723
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY           G+   + P    S  ++     +     AQ PK SCH+VIT++W PS +D ++GR+PG
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNY----QLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPG 200          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.331e-37
Identity = 96/243 (39.51%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY            +V  + P    +  II     +     AQ  K SCH VI  +W PS  D  A RVPG      +++  GL    G + AV    +G +  + G L +P G + DC
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLV--NNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIIN-GGLECNMGPNTAVE-SRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.975e-37
Identity = 78/199 (39.20%), Postives = 108/199 (54.27%), Query Frame = 1
Query:  175 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRG 759
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY            ++++            + +      P      SCHEVIT EW PS  D+ AGR PG      +++  G
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNY--GECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGG 264          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.741e-36
Identity = 92/243 (37.86%), Postives = 123/243 (50.62%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY            +V  + P    +  II     +      Q  K SCH VI  +W PS  D  A RVPG      +++ +      G + A     +G +  + G L +P G + DC
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELV--NNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQ-FECGMGPNTAAE-SRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.670e-35
Identity = 90/249 (36.14%), Postives = 129/249 (51.81%), Query Frame = 1
Query:  136 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY               +   +C   S I   + L      +  K SCH+V+  E++P   D+ A R  G      +++  GL   +  D  V   + G +  +   LG+  G + DC
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANC---SDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVN-GGLECNRAGDARVNNRI-GFYRRYCQVLGVDVGPNLDC 284          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.849e-35
Identity = 92/243 (37.86%), Postives = 128/243 (52.67%), Query Frame = 1
Query:  142 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY           G    + P    +   +     +     AQ  K SCH+VIT +W PSA D +A R PG      +++  G+   +G +  V    +G +  +   L + PG + DC
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNY----DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIIN-GGIECGKGQNPQVE-DRIGFYRRYCTILNVAPGDNLDC 238          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.860e-35
Identity = 99/262 (37.79%), Postives = 132/262 (50.38%), Query Frame = 1
Query:  100 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY           G+     P    +  ++     +     AQ  K SCH+VI   W PSA D  AGRVPG      +++  G+    G +DA     +G +  +   LG   G + DC
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNY----QAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIIN-GGIECGVGQNDANV-DRIGYYKRYCDMLGAGYGSNLDC 253          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.083e-34
Identity = 96/255 (37.65%), Postives = 122/255 (47.84%), Query Frame = 1
Query:  103 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLVSG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            G G   G    G G   G L  II   MF+D+L YRND +CPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HET G W  A G +Y WGYC          + N NY   G       +Q                   +VE      + ++    ++        Q PK SCH VIT+ W PSA D  AGRVPG      +++  G+   QG  +      +G + T+   LG   G + DC
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYC----------HMNYNYGLCGDDLNLPLLQ----------------EPELVETDPFIAFKTALWFWMT-------PQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIIN-GGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDC 286          
BLAST of DY260195 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 7.017e-34
Identity = 91/237 (38.40%), Postives = 121/237 (51.05%), Query Frame = 1
Query:  160 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLXXXXXXXXXXGVVEQSRPSCY*SSTIIQVSNLV-SG*PAQPPKASCHEVITDEWKPSANDLNAGRVPGIRSNHKLLSTRGLNVAQGWDDAVP*PVMGSFTTFRGRLGIPPGYHPDC 867
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY           G    + P    +   I     +      Q  K S H+VI   W PSA D  A RVPG      +++  G+    G +DAV    +G +  + G L + PG + DC
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNY----EKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIIN-GGIECGIGRNDAVE-DRIGYYRRYCGMLNVAPGENLDC 244          
The following BLAST results are available for this feature:
BLAST of DY260195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI12_ORYSJ3.143e-4241.20Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ1.560e-4147.09Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI2.331e-3739.51Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI8_POPTR3.975e-3739.20Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC5.741e-3637.86Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ1.670e-3536.14Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC2.849e-3537.86Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ4.860e-3537.79Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_POPTR1.083e-3437.65Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIQ_TOBAC7.017e-3438.40Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260195 ID=DY260195; Name=DY260195; organism=Citrus clementina; type=EST; length=1170bp
ATTGATATCATCTTTGTTGCTTTCAAAATGAGGCTTATTGCGTCCTTACT
AGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAGCACGGAATT
GTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCACGGGACGGAT
GGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCT
TCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACACTTATG
ATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGA
AATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGG
CCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAGAATATGCTT
GGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAAT
CTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACT
CACTTGGAATTACAATTACTTACGGTGCCGGAGAAGACCTAGGGCTAGGA
GAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATC
ATTCAAGTCAGCAATCTGGTTTCTGGATGACCCGCACAGCCCCCCAAAGC
ATCCTGCCACGAAGTCATTACCGACGAATGGAAACCATCCGCCAATGACC
TAAACGCCGGCCGGGTTCCCGGAATACGGTCTAACCACAAATTATTATCC
ACGCGGGGATTGAATGTGGCCCAGGGTTGGGATGACGCCGTACCCTAACC
CGTAATGGGTTCCTTTACCACTTTCCGGGGCAGGTTGGGGATTCCCCCTG
GTTACCATCCTGATTGCCTCCCCCCAACAGCCCTTTGGGCCTATTCCGGA
CGGCCCCACCCTCGCGGACCCCCCAGCCCACCGCTTTTGTAAAAAAACCC
TCCACAAAACCCCCCCTACAAAAAACCCTTCAGGTGTCCCCTTGGGGGGG
GGGACCAACACCTTTTTGTCCCCCCCCTTTTGAGAAAAAAATTTCAACAA
AACCATACCGCCCCACGAGGGGATCACATCGCCCTCCCCCCCCCCCAAAC
AACACCACCACAAAACAAACACAAAAACACCCCCCCTCCTTCTCTCCGCT
CATCACCCGGCGGCATCTCC
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