DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_HELPJ (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori J99 GN=typA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.438e-26
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 576
            NIRN++VIAHVDHGK+TL D L++ +G  ++    D R+ D+   E ERGITI S   ++YY+ T                 IN+ID+PGH DF  EV   L++ DG L++VD  EGV  QT+ V+++AL   I P++ VNK+D+   E     +E +  F
Sbjct:    3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_NITSB (GTP-binding protein lepA OS=Nitratiruptor sp. (strain SB155-2) GN=lepA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.469e-25
Identity = 64/144 (44.44%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL D L+   G I      D ++ DT   E ERGITIK+  + L Y+            + G EY++NLID+PGHVDFS EV+ +L  ++GAL+VVD  +GV  QT   +  AL   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRLIQECGAIEDRKMSD-QVMDTMDIEKERGITIKAQSVRLTYK------------KDGKEYILNLIDTPGHVDFSYEVSRSLASSEGALLVVDASQGVEAQTIANVYIALENDLELIPVINKID 133          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_DESPS (GTP-binding protein lepA OS=Desulfotalea psychrophila GN=lepA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.887e-24
Identity = 63/144 (43.75%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL D ++   G+I      D ++ D    E ERGITIKS  + L Y   D           G EY++NL+D+PGHVDFS EV+ AL   +GAL++VD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRMIQECGVITARDFQD-QLLDNMDIERERGITIKSQTVCLPYTAKD-----------GKEYILNLVDTPGHVDFSYEVSRALTSCEGALLIVDAAQGVEAQTLANLYLAMENDLEIIPVINKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_SULDN (GTP-binding protein lepA OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=lepA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.464e-24
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL D ++   G ++    G  +M DT   E ERGITIK+  + L Y             + G  Y++NLID+PGHVDFS EV+ +L  +DGAL++VD  +GV  QT   +  A+   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQECGSVSDRELGK-QMMDTMDIEKERGITIKAQSVRLDYV------------KDGEHYILNLIDTPGHVDFSYEVSKSLASSDGALLIVDAAQGVEAQTIANVYLAMENNLTLIPVINKID 133          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_NITHX (GTP-binding protein lepA OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=lepA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.464e-24
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   58 AEELRRIMDFP-HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            ++ELR+    P  NIRN S++AH+DHGKSTL D L+   G ++ +E+AG  ++ D+   E ERGITIK+  + L Y   D           G +Y+ NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QAL      V  +NK+D
Sbjct:    2 SDELRKRGTTPIANIRNFSIVAHIDHGKSTLADRLIQMTGGLSDREMAGKEQVLDSMDIERERGITIKAQTVRLNYHAKD-----------GKDYIFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQALDNNHEIVPVLNKVD 148          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_BRAJA (GTP-binding protein lepA OS=Bradyrhizobium japonicum GN=lepA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.203e-24
Identity = 62/145 (42.76%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S++AH+DHGKSTL D L+    G+  +E+AG  ++ D+   E ERGITIK+  + L Y   D           G +Y+ NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QAL      V  +NK+D
Sbjct:    8 NIRNFSIVAHIDHGKSTLADRLIQMTGGLTDREMAGKEQVLDSMDIERERGITIKAQTVRLAYRAKD-----------GKDYIFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQALDNNHEIVPVLNKVD 141          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_CAMFF (GTP-binding protein lepA OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=lepA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.489e-24
Identity = 61/145 (42.07%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   91 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +NIRN S+IAH+DHGKSTL D +++  G +   V    ++ DT   E ERGITIK+  + L Y++            +G  Y++NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   +  AL   +  +  +NK+D
Sbjct:    2 NNIRNFSIIAHIDHGKSTLADRIISECGAVDSRVMS-AQVMDTMDIEKERGITIKAQSVRLTYKL------------EGQIYILNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVYIALENNLEIIPVINKID 133          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_NITWN (GTP-binding protein lepA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=lepA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.169e-24
Identity = 62/145 (42.76%), Postives = 89/145 (61.38%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S++AH+DHGKSTL D L+   G ++ +E+AG  ++ D+   E ERGITIK+  + L Y   D           G +Y+ NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QAL      V  +NK+D
Sbjct:    8 NIRNFSIVAHIDHGKSTLADRLIQMTGGLSDREMAGKEQVLDSMDIERERGITIKAQTVRLKYRAKD-----------GKDYVFNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQALDNNHEIVPVLNKVD 141          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_CAMLR (GTP-binding protein lepA OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=lepA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.169e-24
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL D +++  G I+  +  + ++ DT   E ERGITIK+  + L Y+  +             EY++NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   +  AL   +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIISECGAISDRLMSN-QVMDTMDIEKERGITIKAQSVRLNYKFNN------------EEYVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVYIALENNLEIIPVINKID 133          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_ALKMQ (GTP-binding protein lepA OS=Alkaliphilus metalliredigens (strain QYMF) GN=lepA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.169e-24
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 1
Query:   82 DFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            D    IRN S+IAH+DHGKSTL D L+   G+I+Q      ++ D  + E ERGITIK   I L Y+  D           G +Y +NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT   +  AL + +  +  +NK+D
Sbjct:    4 DRQRKIRNFSIIAHIDHGKSTLADRLIERTGLISQREM-QAQVLDNMELERERGITIKLQSIRLIYKAKD-----------GQDYYLNLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTMANVYLALEQNLEIIPVINKID 139          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TYPA_HELPJ3.438e-2640.99GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]
LEPA_NITSB8.469e-2544.44GTP-binding protein lepA OS=Nitratiruptor sp. (str... [more]
LEPA_DESPS1.887e-2443.75GTP-binding protein lepA OS=Desulfotalea psychroph... [more]
LEPA_SULDN2.464e-2442.36GTP-binding protein lepA OS=Sulfurimonas denitrifi... [more]
LEPA_NITHX2.464e-2441.77GTP-binding protein lepA OS=Nitrobacter hamburgens... [more]
LEPA_BRAJA4.203e-2442.76GTP-binding protein lepA OS=Bradyrhizobium japonic... [more]
LEPA_CAMFF5.489e-2442.07GTP-binding protein lepA OS=Campylobacter fetus su... [more]
LEPA_NITWN7.169e-2442.76GTP-binding protein lepA OS=Nitrobacter winogradsk... [more]
LEPA_CAMLR7.169e-2442.36GTP-binding protein lepA OS=Campylobacter lari (st... [more]
LEPA_ALKMQ7.169e-2441.22GTP-binding protein lepA OS=Alkaliphilus metallire... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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