DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.787e-60
Identity = 122/242 (50.41%), Postives = 168/242 (69.42%), Query Frame = 1
Query:   43 MVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSF--KGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGH----VQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVD 750
            M  F   ++  +M    NIRN+SVIAHVDHGKSTLTD LV  A I++++  G  R  D+R+DE +RGITIKS+ ISL++++    L+++  +G+  G E+LINLIDSPGHVDFSSEVTAALR+TDGALVVVDC++G+CVQTETVL QA+ ERI P L +NK+DR  LEL+   E+  +  ++ +E  N  ++T     LG+      + PEK  ++F +GL GW FTL  FA+ Y  +F ++
Sbjct:    1 MADFHISKVHELMMNQKNIRNISVIAHVDHGKSTLTDCLVIKAKIVSKDSGGG-RYMDSREDEQQRGITIKSSAISLHFQVQKDVLEAYTKEGDTNGTEFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVDGICVQTETVLGQAMNERIIPTLVLNKLDRAILELEYPQEKLGEVLRRRVEGFNAKLST-----LGYNFKVESLLPEKNEISFCSGLQGWGFTLRQFARFYLEKFNMN 236          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 7.351e-53
Identity = 111/259 (42.86%), Postives = 165/259 (63.71%), Query Frame = 1
Query:   61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY----------EDPLLGHVQVY--PEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVDESKMMERPGGENLL*PR 801
            E+L  +     NIRN +++AHVDHGK+TL DSL+A+ GII+ ++AG VR  D R+DE  RGIT+KS+ ISL++++    +     +R   +YLINLIDSPGHVDFSSEV++A R+ DGA V+VD +EGVC QT TVLRQA  +RI+ +L +NKMDR   EL++   EA+    +++E  N ++ T+           D ++    +Y  PE+G V F++   GWAF L  F++ Y  + G+ +  + +   G+  L P+
Sbjct:    7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFKV----ISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQAWIDRIKVILVINKMDRLITELKLSPIEAHYHLLRLVEQVNAVIGTFYTGELMQLADNDEVISDEGIYFAPEQGNVVFASAYDGWAFCLDQFSEFYEKKLGLKQKALTKCLWGDYYLDPK 261          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.386e-51
Identity = 111/282 (39.36%), Postives = 163/282 (57.80%), Query Frame = 1
Query:   43 MVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMAT-----------------------------------YEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVDESKMMERPGGE 783
            MV  + +++ ++     NIRN+ V+AHVDHGK+TL D L+++ GII+  +AG +R  D+R+DE  RGIT+KS+ ISL+Y   +             EYLINLIDSPGHVDFSSEV+ A+RI DG ++VVD +EGVC QT+ VLRQA  E IRPVL +NK+DR  +EL+   +EAY   + ++E  N +  T                                    ED    H+   PE+G V F++ + GW F + +FA++Y+ + G+ +  +M+   G+
Sbjct:    1 MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYATGN------------EEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGD 270          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.533e-50
Identity = 114/283 (40.28%), Postives = 165/283 (58.30%), Query Frame = 1
Query:   43 MVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNE-YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY--------------EDPLLGH----VQVY-----------------PEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVDESKMMERPGGE 783
            MV    +++ R+     NIRN+ V+AHVDHGK+TL D L+++ GII+  +AG +R  D+R+DE  RGIT+KS+ ISL+Y              +G+E YLINLIDSPGHVDFSSEV+ A+RI DG ++VVD +EGVC QT+ VLRQA  E IRPVL +NK+DR  +EL+   +EAY   + ++E  N +  T               E     H     QVY                 PE+G V F++ + GW F + +FA++Y+ + G+ +  +++   G+
Sbjct:    1 MVLSGVDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHYA-------------EGHEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQAKPHSEQGEQVYDWSAGLEDVDDSQLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLLKTLWGD 270          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.614e-50
Identity = 110/282 (39.01%), Postives = 168/282 (59.57%), Query Frame = 1
Query:   43 MVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQG--NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY------EDPLLGHVQV------------------YPEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVDESKMMERPGGENLL*PRLQE 810
            M +  +E  +R+ + P  IRN+ ++AHVDHGK++L+DSL+A+ GII+Q +AG +R  D R DE  RGIT++S+ ISLY+ +    L+  +G  +   +E+L+NLIDSPGH+DFSSEV+AA R+ DGA+V+VD +EGVC QT TVLRQ   E+++P+L +NK+DR   ELQ+  +EAY    KVIE  N ++ ++       D L    Q+                   P    V F++ + GW F +   AK Y  + G     + +   G+  + P+ ++
Sbjct:    1 MPRVESETYKRLQNDPSCIRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLYFRV----LRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDGAVVLVDVVEGVCSQTVTVLRQCWTEKLKPILVLNKIDRLITELQLTPQEAYIHLSKVIEQVNSVIGSFFANERQLDDLFWREQLEKNENAEYIEKDDSGIYFNPTDNNVIFASAIDGWGFNIGQLAKFYEQKLGAKRENLQKVLWGDFYMDPKTKK 278          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.174e-48
Identity = 111/252 (44.05%), Postives = 156/252 (61.90%), Query Frame = 1
Query:   64 ELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYED-PLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFGVDESKMME--RPGGENLL*PRLQE 810
            E+ +IM     +RN+ + AHVDHGK+TL+DSL+AAAGII++++AG+    D    E  RGIT+KS  ISLY+E             +G  Y+INLID+PGHVDFS++ T A+R+ DGA++VVD +EGV  QTE  LR AL ER+RPVL +NK+DR   EL++  +E  Q F ++I+  N ++A Y D       Q+ P KG VAF +    W FT+       A Q G+  S +++  + G E L  P LQ+
Sbjct:    9 EILKIMRNLEQVRNIGITAHVDHGKTTLSDSLLAAAGIISEKIAGEALALDYLDVEQRRGITVKSANISLYHEY------------KGKPYVINLIDTPGHVDFSAKTTRAMRVIDGAILVVDAVEGVMTQTEMYLRAALEERVRPVLFINKVDRLIKELRLSPQEIQQRFVQIIKEVNQLIAMYADKEFKTKWQLDPAKGQVAFGSARDRWGFTVP-----MAKQKGIKFSDIVDLYKKGKEAL--PELQK 241          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 5.451e-48
Identity = 100/216 (46.30%), Postives = 139/216 (64.35%), Query Frame = 1
Query:   64 ELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            +++ +M  P  IRN+ ++AH+DHGK+TL+D+L+A AG+I+ E+AGD R  D  + E  RGITI +  +S+ +              +GNEYLINLID+PGHVDF  +VT A+R  DGA+VVV  +EG+  QTETVLRQAL E +RPVL +NK+DR   EL++D  E  + F K+I NAN +I     +      QV  E G+VAF +  H WA  +
Sbjct:   10 KIKELMYQPEYIRNIGIVAHIDHGKTTLSDNLLAGAGMISAELAGDQRFLDFDEQEQARGITIDAANVSMVHSY------------EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVCAVEGIMPQTETVLRQALKENVRPVLFINKVDRLINELKLDASELQERFVKIIANANKLIKNMAPEEFRDKWQVRVEDGSVAFGSAYHNWAINV 213          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.451e-48
Identity = 100/221 (45.25%), Postives = 143/221 (64.71%), Query Frame = 1
Query:   64 ELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDP-LLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAK 723
            E+ +IM     IRN+ +IAHVDHGK+T +DSL+AAAGII++ +AG+  + D    E +RGIT+KS  +SLY+E             +G  Y+INLID+PGHVDFS +VT +LR+ DGA+VVVD +EGV  QTETV+RQAL ER+RP+L +NK+DR   EL++  E+  Q F ++I+  N ++  Y +P      ++ P  G VAF +    W  ++    K
Sbjct:   10 EIEKIMRNIDQIRNIGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLNVEKQRGITVKSANVSLYHEY------------EGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETVIRQALEERVRPILFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEFRKKWKLDPNAGMVAFGSAKDKWGISVPQVKK 218          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 9.298e-48
Identity = 103/222 (46.40%), Postives = 139/222 (62.61%), Query Frame = 1
Query:   61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAK 723
            ++++ +M  P  IRN+ ++AH+DHGK+TL+D+L+AAAG+I+ E+AGD R  D  + E ERGITI +  +S+ +   D            NEYLINLID+PGHVDF  +VT A+R  DGA+VVV  +EGV  QTETVLRQAL E +RPVL +NK+DR   EL++D  E    F K+I   N +I     +      QV  E GTVAF +  H WA  +    K
Sbjct:    9 KKIKDLMYKPDYIRNIGIVAHIDHGKTTLSDNLLAAAGMISSELAGDQRFLDFDEQEQERGITIDAANVSMVHSYED------------NEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVCAVEGVMPQTETVLRQALKENVRPVLFINKVDRLINELKLDDAELQNRFVKIIAGVNKLIKNMAPEQYKTEWQVKIEDGTVAFGSAYHNWAINVPEMLK 218          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METMT (Elongation factor 2 OS=Methanococcoides methylutens GN=fusA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.615e-47
Identity = 102/226 (45.13%), Postives = 144/226 (63.72%), Query Frame = 1
Query:   49 KFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAK 723
            K   E +  +M  P  IRN+++IAH+DHGK+TL+D+L+A AG+I++++AG     D+ ++E ERGITI S  +S+ +E  D             EYLINLID+PGHVDF  +VT A+R  DGA+VV+D +EG   QTETVLRQAL E +RPVL +NK+DR   ELQVD +E      K+I++ N +I    E+      +V   +GTVAF + L+ WA ++    K
Sbjct:    5 KKMVERVTALMSNPVMIRNIAIIAHIDHGKTTLSDNLLAGAGMISKDLAGRQLFMDSDEEEQERGITIDSANVSMVHEFED------------EEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALKEHVRPVLFINKVDRLINELQVDAQEMQIRLGKLIDHVNKLIKGMNEERYNQGWRVDAAEGTVAFGSALYNWAISVPMMQK 218          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_ENCCU2.787e-6050.41Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
RIA1_SCHPO7.351e-5342.86Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
ETUD1_HUMAN1.386e-5139.36Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_MOUSE1.533e-5040.28Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_YEAST2.614e-5039.01Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_STAMF4.174e-4844.05Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_METTH5.451e-4846.30Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_AERPE5.451e-4845.25Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_METST9.298e-4846.40Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_METMT4.615e-4745.13Elongation factor 2 OS=Methanococcoides methyluten... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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