DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_COXBR (GTP-binding protein lepA OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 63/164 (38.41%), Postives = 92/164 (56.10%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            IRN S+IAH+DHGKSTL D  +   G +++      ++ D+   E ERGITIK+  ++L ++  D           G+ Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D      Q D E A Q  + VI
Sbjct:    9 IRNFSIIAHIDHGKSTLADRFIQLCGGLSEREM-KAQVLDSMDIERERGITIKAQSVTLNFKSQD-----------GHFYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVATCYTAIEQGLVVLPVLNKIDL----PQADPERAIQEIEDVI 156          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_COLP3 (GTP-binding protein lepA OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 66/166 (39.76%), Postives = 95/166 (57.23%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            NIRN S+IAH+DHGKSTL+D L+    G+ A+E+  + ++ D+   E ERGITIK+  ++L Y+  D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      AL   +  +  +NK+D      Q D E   +  + +I
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRLIQHCGGLQAREM--EAQVLDSMDIERERGITIKAQSVTLDYKAKD-----------GEIYQLNFIDTPGHVDFSYEVSRSLASCEGALLVVDAGQGVEAQTVANCYTALEMDLEVLPILNKIDL----PQADPERVCEEIEHII 151          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_CLOAB (GTP-binding protein lepA OS=Clostridium acetobutylicum GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +IRN  ++AH+DHGKSTL D L+   G +      + ++ D  + E ERGITIKS    L Y          K    G EY++NLID+PGHVDF+ EV+ +L   +GA++VVD  +G+  QT      A+   +  V  +NK+D
Sbjct:    8 HIRNFCIVAHIDHGKSTLADRLLEHTGTLTHREMEE-QVLDNMEIERERGITIKSQAARLIY----------KRPEDGQEYILNLIDTPGHVDFNYEVSRSLAACEGAVLVVDATQGIQAQTLANCYMAVDHGLEVVPVINKID 140          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_CHLPB (GTP-binding protein lepA OS=Chlorobium phaeobacteroides (strain BS1) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN  +IAH+DHGKSTL D  + A   +    A   ++ D    E ERGITIKS  I + Y   D           G EY++NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:   11 IRNFCIIAHIDHGKSTLADRFLEATDTLLHNQA-TAQVLDDMDLERERGITIKSHAIQMRYTSAD-----------GEEYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTIANLYLAVEAGLEILPVINKID 141          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_CHLAB (GTP-binding protein lepA OS=Chlamydophila abortus GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKST+ D L+ +   + Q    + ++ D+   E ERGITIK+  +++YY+              G  Y +NLID+PGHVDFS EV+ +L   +GAL++VD  +GV  Q+   +  AL   +  +  +NK+D
Sbjct:    8 NIRNFSIIAHIDHGKSTIADRLLESTSTVEQREMRE-QLLDSMDLERERGITIKAHPVTMYYKYN------------GEVYQLNLIDTPGHVDFSYEVSRSLTACEGALLIVDAAQGVQAQSLANVYLALERDLEIIPILNKID 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_BARQU (GTP-binding protein lepA OS=Bartonella quintana GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN S++AH+DHGKSTL D L+   G +      + ++ D+   E ERGITIK+  + L+Y+            + G  Y++NLID+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QA+      V+ +NK+D
Sbjct:    8 IRNFSIVAHIDHGKSTLADRLIQMTGGLETREMKE-QVLDSMDIERERGITIKAQTVRLHYKA-----------KNGETYILNLIDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQAIDNSHELVVVLNKVD 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_BARHE (GTP-binding protein lepA OS=Bartonella henselae GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 57/143 (39.86%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN S++AH+DHGKSTL D L+   G +      + ++ D+   E ERGITIK+  + L+Y+            + G  Y++NLID+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QA+      V+ +NK+D
Sbjct:    8 IRNFSIVAHIDHGKSTLADRLIQMTGGLETREMKE-QVLDSMDIERERGITIKAQTVRLHYKA-----------KNGETYILNLIDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQAIDNSHELVVVLNKVD 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_ALHEH (GTP-binding protein lepA OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.495e-21
Identity = 65/186 (34.95%), Postives = 100/186 (53.76%), Query Frame = 1
Query:   85 FPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD-------RCFLELQ----VDGEEAYQTFQKVIENANVIM 609
            + + IRN S+IAH+DHGKSTL D  +  +G ++     + ++ D+   E ERGITIK+  +SL Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  Q+      A+ + +  +  +NK+D       R   +++    +DGEEA +   K  E    ++
Sbjct:   28 YMNRIRNFSIIAHIDHGKSTLADRFIQHSGALSNREMAE-QVLDSMDLERERGITIKAQSVSLEYRAKD-----------GQTYELNFIDTPGHVDFSYEVSRSLFACEGALLVVDASQGVEAQSVANCYTAVDQGLEIIPVLNKIDLPSSDPQRVIQQIEEIIGLDGEEALKISAKTGEGIEELL 201          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_HAEIN (GTP-binding protein typA/bipA homolog OS=Haemophilus influenzae GN=typA PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV--RMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G   +   GDV  R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   L + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:   10 LRNIAIIAHVDHGKTTLVDKLLQQSGTF-ESARGDVDERVMDSNDLEKERGITILAKNTAINW----------------NDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDR 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: RRF2M_EMENI (Ribosome-releasing factor 2, mitochondrial OS=Emericella nidulans GN=mef2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 60/150 (40.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query:  100 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDV----RMTDTRQDEAERGITIKSTGISLYY---EMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            RN+ +IAH+D GK+T T+ ++  +G+  +   GDV     +TD    E  RGITI+S  I+ ++   E  +A  +  +  R  + +++NLID+PGH DF+ EV  +LRI DGA+ ++D + GV  QTE V  QA    I  ++ VNKMDR
Sbjct:   63 RNIGIIAHIDAGKTTTTERMLYYSGLTRR--IGDVDEGSTVTDFLPAERARGITIQSAAITFHWPPAECGNATRQDPRSPRSASSHMVNLIDTPGHADFTFEVLRSLRILDGAVCILDGVAGVEAQTEQVWHQASTYNIPRIVYVNKMDR 210          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_COXBR1.495e-2138.41GTP-binding protein lepA OS=Coxiella burnetii (str... [more]
LEPA_COLP31.495e-2139.76GTP-binding protein lepA OS=Colwellia psychrerythr... [more]
LEPA_CLOAB1.495e-2139.58GTP-binding protein lepA OS=Clostridium acetobutyl... [more]
LEPA_CHLPB1.495e-2142.66GTP-binding protein lepA OS=Chlorobium phaeobacter... [more]
LEPA_CHLAB1.495e-2139.58GTP-binding protein lepA OS=Chlamydophila abortus ... [more]
LEPA_BARQU1.495e-2139.86GTP-binding protein lepA OS=Bartonella quintana GN... [more]
LEPA_BARHE1.495e-2139.86GTP-binding protein lepA OS=Bartonella henselae GN... [more]
LEPA_ALHEH1.495e-2134.95GTP-binding protein lepA OS=Alkalilimnicola ehrlic... [more]
TYPA_HAEIN1.952e-2137.67GTP-binding protein typA/bipA homolog OS=Haemophil... [more]
RRF2M_EMENI1.952e-2140.00Ribosome-releasing factor 2, mitochondrial OS=Emer... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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