DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_SYNPX (GTP-binding protein lepA OS=Synechococcus sp. (strain WH8102) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN  +IAH+DHGKSTL D L+   G +A     + +  D    E ERGITIK     + Y  TD           G +Y++NLID+PGHVDFS EV+ +L+  +GAL+VVD  +GV  QT   +  AL   +  +  +NK+D
Sbjct:    9 IRNFCIIAHIDHGKSTLADRLLQDTGTVANRDMQE-QFLDNMDLERERGITIKLQAARMNYTATD-----------GQQYVLNLIDTPGHVDFSYEVSRSLQACEGALLVVDASQGVEAQTLANVYLALDNDLEIIPVLNKID 139          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_RICAH (GTP-binding protein lepA OS=Rickettsia akari (strain Hartford) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN S+IAH+DHGKSTL D L+    G+ A+E+   V   D+   E ERGITIK+  + L Y+  D           GN Y +NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QA+      V  +NK+D
Sbjct:    7 IRNFSIIAHIDHGKSTLADRLIEHCGGLQAREMRTQV--LDSMDIEKERGITIKAQTVRLVYKAKD-----------GNTYYLNLMDTPGHVDFAYEVSRSLAACEGSLLVVDSTQGVEAQTLANVYQAIEHDHEIVPVLNKID 137          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_RHILO (GTP-binding protein lepA OS=Rhizobium loti GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +IRN S++AH+DHGKSTL D L+ + G +      + ++ D+   E ERGITIK+  + L Y   +           G +Y++NLID+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QA+      V+ +NK+D
Sbjct:    7 HIRNFSIVAHIDHGKSTLADRLIQSTGGLELRDMKE-QVLDSMDIERERGITIKAQTVRLKYRANN-----------GEDYILNLIDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQAIDNNHEIVVVLNKVD 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_RALSO (GTP-binding protein lepA OS=Ralstonia solanacearum GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            NIRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D        D + A Q  + VI
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREM-EAQVLDSMDIEKERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGVEVVPVLNKIDL----PAADPDSAIQEIEDVI 151          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_RALPJ (GTP-binding protein lepA OS=Ralstonia pickettii (strain 12J) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            NIRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D        D + A Q  + VI
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQLCGGLSDREM-EAQVLDSMDIEKERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGVEVVPVLNKIDL----PAADPDNAIQEIEDVI 151          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_PSEMY (GTP-binding protein lepA OS=Pseudomonas mendocina (strain ymp) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            +IRN S+IAH+DHGKSTL D  +    G+ A+E+  + ++ D+   E ERGITIK+  ++L+Y+  D           G  Y +N ID+PGHVDF+ EV+ +L   +GAL+VVD  +GV  Q+      A+ + +  +  +NKMD      Q D +      +K+I
Sbjct:    6 HIRNFSIIAHIDHGKSTLADRFIQMCGGLAAREM--EAQVLDSMDLERERGITIKAHSVTLHYKAKD-----------GKTYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDL----PQADPDRVKDEIEKII 154          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_PSEE4 (GTP-binding protein lepA OS=Pseudomonas entomophila (strain L48) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 62/166 (37.35%), Postives = 95/166 (57.23%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVA-AAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            +IRN S+IAH+DHGKSTL D  +    G+ A+E+  + ++ D+   E ERGITIK+  ++L+Y+  D           G  Y +N ID+PGHVDF+ EV+ +L   +GAL+VVD  +GV  Q+      A+ + +  +  +NKMD      Q D +      +K+I
Sbjct:    6 HIRNFSIIAHIDHGKSTLADRFIQMCGGLTAREM--EAQVLDSMDLERERGITIKAHSVTLHYKAQD-----------GKTYQLNFIDTPGHVDFTYEVSRSLAACEGALLVVDAGQGVEAQSVANCYTAIEQGLEVMPVLNKMDL----PQADPDRVKDEIEKII 154          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_PROA2 (GTP-binding protein lepA OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 60/143 (41.96%), Postives = 83/143 (58.04%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN  +IAH+DHGKSTL D L+   G + Q      ++ D    E ERGITIKS  I ++++  D           G  Y++NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   L  A+   +  +  +NK+D
Sbjct:   11 IRNFCIIAHIDHGKSTLADRLLEVTGTL-QHNQMTAQVLDDMDLERERGITIKSHAIQMHHKAGD-----------GRAYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTIANLYLAVEAGLEIIPVINKID 141          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_MARMM (GTP-binding protein lepA OS=Maricaulis maris (strain MCS10) GN=lepA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 60/146 (41.10%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   88 PHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            P  IRN S++AH+DHGKSTL D L+   G + Q    + ++ D  + E ERGITIK+  + L Y   D           G  Y++NLID+PGHVDF+ EV  +L   +G+L+VVD  +GV  QT   + QA+      V  +NK+D
Sbjct:    5 PSLIRNFSIVAHIDHGKSTLADRLIQVTGGLTQREMKE-QVLDNMELERERGITIKAQTVRLDYTAKD-----------GKTYVLNLIDTPGHVDFAYEVNRSLAACEGSLLVVDASQGVEAQTLANVYQAIEVNHEIVPVLNKID 138          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_LACCB (GTP-binding protein lepA OS=Lactobacillus casei (strain BL23) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.952e-21
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   76 IMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            ++D   +IRN S+IAH+DHGKSTL D ++     IA+      ++ D    E ERGITIK   + L+Y+            + G  Y+ +LID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT   +  A+ + +  +  +NK+D
Sbjct:    6 MLDRQKHIRNFSIIAHIDHGKSTLADRILELTDTIAKRDM-QAQVLDDMALERERGITIKLNAVELHYKA-----------KNGETYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDATQGVEAQTLANVYLAIDDDLEIIPVINKVD 143          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_SYNPX1.952e-2141.96GTP-binding protein lepA OS=Synechococcus sp. (str... [more]
LEPA_RICAH1.952e-2143.06GTP-binding protein lepA OS=Rickettsia akari (stra... [more]
LEPA_RHILO1.952e-2139.58GTP-binding protein lepA OS=Rhizobium loti GN=lepA... [more]
LEPA_RALSO1.952e-2139.39GTP-binding protein lepA OS=Ralstonia solanacearum... [more]
LEPA_RALPJ1.952e-2139.39GTP-binding protein lepA OS=Ralstonia pickettii (s... [more]
LEPA_PSEMY1.952e-2137.35GTP-binding protein lepA OS=Pseudomonas mendocina ... [more]
LEPA_PSEE41.952e-2137.35GTP-binding protein lepA OS=Pseudomonas entomophil... [more]
LEPA_PROA21.952e-2141.96GTP-binding protein lepA OS=Prosthecochloris aestu... [more]
LEPA_MARMM1.952e-2141.10GTP-binding protein lepA OS=Maricaulis maris (stra... [more]
LEPA_LACCB1.952e-2138.67GTP-binding protein lepA OS=Lactobacillus casei (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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