DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_PELPD (GTP-binding protein lepA OS=Pelobacter propionicus (strain DSM 2379) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 63/164 (38.41%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            +RN S+IAH+DHGKSTL D L+   G ++Q    + +  D    E ERGITIK+  + L Y   D           GN+Y++NLID+PGHVDF+ EV+ +L   +G L+VVD  +GV  QT   +  AL   +     +NK+D        D E   Q  +++I
Sbjct:    6 LRNFSIIAHIDHGKSTLADRLLEFTGALSQREMQN-QFLDKMDLERERGITIKAQTVRLTYRADD-----------GNDYVLNLIDTPGHVDFTYEVSRSLAACEGGLLVVDASQGVEAQTLANVYLALDINLEVFPVLNKIDL----PAADPERVIQEIEEII 153          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_PARD8 (GTP-binding protein lepA OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN  +IAH+DHGKSTL D L+     +  +     ++ D    E ERGITIKS  I + Y        ++KGE    EY++NLID+PGHVDFS EV+ ++   +GAL++VD  +G+  QT + L  A+   +  +  +NK+D
Sbjct:    3 NIRNFCIIAHIDHGKSTLADRLLEYTKTVEGKDM-QAQVLDDMDLERERGITIKSHAIQMKY--------NYKGE----EYILNLIDTPGHVDFSYEVSRSIAACEGALLIVDAAQGIQAQTISNLYMAIENDLEIIPVMNKID 133          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FUSNN (GTP-binding protein lepA OS=Fusobacterium nucleatum subsp. nucleatum GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            N RN S+IAH+DHGKST+ D L+   G +++    + ++ D+   E E+GITIK+  ++L+Y+            + G EY +NLID+PGHVDF  EV+ +L   +GAL+VVD  +GV  QT   +  A+   +  +  +NK+D
Sbjct:    9 NKRNFSIIAHIDHGKSTIADRLLEYTGTVSERDMKE-QILDSMDLEREKGITIKAQAVTLFYKA-----------KNGEEYELNLIDTPGHVDFIYEVSRSLAACEGALLVVDAAQGVEAQTLANVYLAIENNLEILPIINKID 140          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FRATW (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FRATT (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FRATN (GTP-binding protein lepA OS=Francisella tularensis subsp. novicida (strain U112) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FRATM (GTP-binding protein lepA OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_FRAT1 (GTP-binding protein lepA OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 57/144 (39.58%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            NIRN S+IAH+DHGKSTL+D  +     +++    + ++ D+   E ERGITIK+  ++L Y   D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+ + +  +  +NK+D
Sbjct:    3 NIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKE-QVLDSMDIERERGITIKAQSVTLDYTARD-----------GQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_DEIRA (GTP-binding protein lepA OS=Deinococcus radiodurans GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN S+IAHVDHGKSTL D ++   G + +    D  + DT + E ERGITIKST I L Y               G  Y+ NLID+PGHVDF+ EV+ +L   +G L++VD  +GV  QT      A+   +  V  +NK+D
Sbjct:   14 IRNFSIIAHVDHGKSTLADRILEQLGAMGERDKRDQTL-DTLELERERGITIKSTPIRLEYT-----------RENGEGYVFNLIDTPGHVDFNYEVSRSLAACEGVLLLVDASQGVEAQTIVNAYLAIDNNLEIVPVINKID 144          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_DECAR (GTP-binding protein lepA OS=Dechloromonas aromatica (strain RCB) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 66/165 (40.00%), Postives = 91/165 (55.15%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVI 588
            +IRN S+IAH+DHGKSTL D ++   G ++     + ++ D+   E ERGITIK+   +L Y+  D           G  Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      AL   +  V  +NK+D        D E A Q  + VI
Sbjct:    3 HIRNFSIIAHIDHGKSTLADRIIHLCGGLSDREM-EAQVLDSMDIERERGITIKAQTAALSYKARD-----------GKVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTALELDVEVVPVLNKIDL----PSADPENARQEIEDVI 151          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_PELPD2.550e-2138.41GTP-binding protein lepA OS=Pelobacter propionicus... [more]
LEPA_PARD82.550e-2140.97GTP-binding protein lepA OS=Parabacteroides distas... [more]
LEPA_FUSNN2.550e-2138.89GTP-binding protein lepA OS=Fusobacterium nucleatu... [more]
LEPA_FRATW2.550e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATT2.550e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATN2.550e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRATM2.550e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_FRAT12.550e-2139.58GTP-binding protein lepA OS=Francisella tularensis... [more]
LEPA_DEIRA2.550e-2142.66GTP-binding protein lepA OS=Deinococcus radioduran... [more]
LEPA_DECAR2.550e-2140.00GTP-binding protein lepA OS=Dechloromonas aromatic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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