DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_ACICJ (GTP-binding protein lepA OS=Acidiphilium cryptum (strain JF-5) GN=lepA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGII-AQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            IRN S+IAH+DHGKSTL D L+   G + A+E+   V   D    E ERGITIK+  + L Y+  D           G  Y++NL+D+PGHVDF+ EV+ +L   +G+L+VVD  +GV  QT   + QA+      V  +NK+D
Sbjct:    9 IRNFSIIAHIDHGKSTLADRLIQTTGALSAREMTEQV--LDNMDIEKERGITIKAQTVRLNYKAKD-----------GKTYVLNLMDTPGHVDFAYEVSRSLAACEGSLLVVDASQGVEAQTLANVYQAIDANHEIVPVLNKID 139          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: GUF1_YEAST (GTP-binding protein GUF1 OS=Saccharomyces cerevisiae GN=GUF1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.550e-21
Identity = 58/162 (35.80%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQ 579
            N RN S++AHVDHGKSTL+D L+    +I    A + ++ D  + E ERGITIK+   S++Y          K +R G  YL++LID+PGHVDF  EV+ +     GA+++VD  +G+  QT      A    ++ +  +NK+D  F +++   ++    F+
Sbjct:   45 NYRNFSIVAHVDHGKSTLSDRLLEITHVIDPN-ARNKQVLDKLEVERERGITIKAQTCSMFY----------KDKRTGKNYLLHLIDTPGHVDFRGEVSRSYASCGGAILLVDASQGIQAQTVANFYLAFSLGLKLIPVINKIDLNFTDVKQVKDQIVNNFE 195          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_SHIFL (GTP-binding protein typA/bipA OS=Shigella flexneri GN=typA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G          R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   + + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:    5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW----------------NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 132          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_ECOLI (GTP-binding protein typA/BipA OS=Escherichia coli (strain K12) GN=typA PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G          R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   + + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:    5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW----------------NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 132          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_ECOL6 (GTP-binding protein typA/bipA OS=Escherichia coli O6 GN=typA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G          R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   + + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:    5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW----------------NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 132          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_ECO57 (GTP-binding protein typA/bipA OS=Escherichia coli O157:H7 GN=typA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G          R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   + + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:    5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW----------------NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 132          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_ECO27 (GTP-binding protein typA/bipA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=typA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   97 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 528
            +RN+++IAHVDHGK+TL D L+  +G          R+ D+   E ERGITI +   ++ +                N+Y IN++D+PGH DF  EV   + + D  L+VVD  +G   QT  V ++A    ++P++ +NK+DR
Sbjct:    5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW----------------NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDR 132          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_VIBVY (GTP-binding protein lepA OS=Vibrio vulnificus (strain YJ016) GN=lepA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +IRN S+IAH+DHGKSTL+D L+   G ++     + ++ D+ + E ERGITIK+  ++L Y+  D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D
Sbjct:    3 HIRNFSIIAHIDHGKSTLSDRLIQVCGGLSDREMAE-QVLDSMELERERGITIKAQSVTLDYKAQD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAIEMDLEVVPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_VIBVU (GTP-binding protein lepA OS=Vibrio vulnificus GN=lepA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +IRN S+IAH+DHGKSTL+D L+   G ++     + ++ D+ + E ERGITIK+  ++L Y+  D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      A+   +  V  +NK+D
Sbjct:    3 HIRNFSIIAHIDHGKSTLSDRLIQVCGGLSDREMAE-QVLDSMELERERGITIKAQSVTLDYKAQD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAIEMDLEVVPILNKID 134          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: LEPA_SHELP (GTP-binding protein lepA OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lepA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.330e-21
Identity = 63/145 (43.45%), Postives = 87/145 (60.00%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIA-QEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMD 525
            +IRN S+IAH+DHGKSTL+D L+   G ++ +E+A  V   D+   E ERGITIK+  ++L Y+  D           G  Y +N ID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT      AL   +  V  +NK+D
Sbjct:    3 HIRNFSIIAHIDHGKSTLSDRLIQECGGLSDREMAAQV--LDSMDLERERGITIKAQSVTLDYKAKD-----------GETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTALDMDLDVVPVLNKID 134          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_ACICJ2.550e-2142.36GTP-binding protein lepA OS=Acidiphilium cryptum (... [more]
GUF1_YEAST2.550e-2135.80GTP-binding protein GUF1 OS=Saccharomyces cerevisi... [more]
TYPA_SHIFL3.330e-2135.42GTP-binding protein typA/bipA OS=Shigella flexneri... [more]
TYPA_ECOLI3.330e-2135.42GTP-binding protein typA/BipA OS=Escherichia coli ... [more]
TYPA_ECOL63.330e-2135.42GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO573.330e-2135.42GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
TYPA_ECO273.330e-2135.42GTP-binding protein typA/bipA OS=Escherichia coli ... [more]
LEPA_VIBVY3.330e-2140.97GTP-binding protein lepA OS=Vibrio vulnificus (str... [more]
LEPA_VIBVU3.330e-2140.97GTP-binding protein lepA OS=Vibrio vulnificus GN=l... [more]
LEPA_SHELP3.330e-2143.45GTP-binding protein lepA OS=Shewanella loihica (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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