DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_SULIL (Elongation factor 2 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=fusA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.307e-45
Identity = 99/246 (40.24%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   55 TAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHV-QVYPEKGTVAFSAGLHGWAFTL-------TNFAKMYASQFGVDESKMME 768
            T E++  +M     +RN+ +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E       +I   N ++  Y +P       + P+ G V F +    W F+L        N   +  +    D+SK+ E
Sbjct:    6 TVEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIFGSAKDKWGFSLPMAQKKGINMKNVIDAYTASDKSKLEE 239          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_SULIK (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=fusA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.307e-45
Identity = 99/246 (40.24%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   55 TAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHV-QVYPEKGTVAFSAGLHGWAFTL-------TNFAKMYASQFGVDESKMME 768
            T E++  +M     +RN+ +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E       +I   N ++  Y +P       + P+ G V F +    W F+L        N   +  +    D+SK+ E
Sbjct:    6 TVEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIFGSAKDKWGFSLPMAQKKGINMKNVIDAYTASDKSKLEE 239          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_SULIA (Elongation factor 2 OS=Sulfolobus islandicus (strain M.16.27) GN=fusA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.307e-45
Identity = 99/246 (40.24%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   55 TAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHV-QVYPEKGTVAFSAGLHGWAFTL-------TNFAKMYASQFGVDESKMME 768
            T E++  +M     +RN+ +IAHVDHGK+T +D+L+AA+GII+ +VAG+    D    E +RGIT+K+  ISLY+E             +G  Y+INLID+PGHVDFS  VT +LR+ DG++VVVD +EG+  QTETVLRQ+L ER+RP+L +NK+DR   EL++  +E       +I   N ++  Y +P       + P+ G V F +    W F+L        N   +  +    D+SK+ E
Sbjct:    6 TVEQVLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLSVEQQRGITVKAANISLYHEA------------EGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTETVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEKWMINPQAGNVIFGSAKDKWGFSLPMAQKKGINMKNVIDAYTASDKSKLEE 239          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.319e-45
Identity = 93/216 (43.06%), Postives = 137/216 (63.43%), Query Frame = 1
Query:   64 ELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            +++ +M  P  IRNM + AH+DHGK+TL+D+L+A AG+I++E+AG   + D  + E  RGITI +  +S+ +              +G +YLINLID+PGHVDF  +VT A+R  DGA++VVD +EGV  QTETVLRQAL E ++PVL +NK+DR   EL++   E  Q F K+I + N ++  Y  +       V  E G+VAF +  + WA ++
Sbjct:   10 KIKELMTQPERIRNMGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVSMVHNY------------EGQDYLINLIDTPGHVDFGGDVTRAMRAIDGAIIVVDAVEGVMPQTETVLRQALREYVKPVLFINKVDRLIKELKLGPNEILQRFAKIITDVNRLIKRYAPEEFKSQWMVKVEDGSVAFGSAYYNWALSV 213          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.641e-45
Identity = 94/226 (41.59%), Postives = 142/226 (62.83%), Query Frame = 1
Query:   49 KFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAK 723
            K  AE +  +M  P+NIRN+ +IAH+ HGK+TLTD+L+A AG++++E+AGD   T   + E ER +TI    +S+ +E             +G++YLINLID+PGHV+F  EVT A+R  DGA+VVVD ++G+  QTETVL+QAL E ++PVL +NK+DR   ELQ+   +  +   +++   N ++  Y  +      +V  + GTVAF + LH WA ++    K
Sbjct:    5 KTMAERVLALMGRPNNIRNIGIIAHIHHGKTTLTDNLLAGAGMLSEELAGDAMFTWWHEQEREREMTIYGAAVSMVHEY------------EGDDYLINLIDTPGHVEFGGEVTRAVRAIDGAVVVVDFVDGIMPQTETVLKQALREYVKPVLFINKVDRAIKELQLPPNKIMERLAEIVVGVNDLIERYAPEEFKDKWKVSVQNGTVAFGSALHNWALSVPYMQK 218          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.257e-44
Identity = 99/221 (44.80%), Postives = 140/221 (63.35%), Query Frame = 1
Query:   49 KFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            K  AE +  +MD P  IRN+ ++AH+DHGK+TL+D+L+A AG+I+ E+AG     D    E  RGITI +  +S+ +E             +G EYLIN+ID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E +RPVL VNK+DR   EL+V+ +E      +VI+N N +I +  E+      ++    G+VAF + L+ WA ++
Sbjct:    5 KKIAERVVALMDKPERIRNIGIVAHIDHGKTTLSDNLLAGAGMISMELAGKQLFMDFDPLEQARGITIDAANVSMVHEY------------EGKEYLINMIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGAMPQTETVLRQALREGVRPVLFVNKVDRMINELKVEKKEMAIRLGRVIDNINKLIRSMDEEHYKAGWRLDAANGSVAFGSALYNWAISV 213          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.257e-44
Identity = 97/218 (44.50%), Postives = 138/218 (63.30%), Query Frame = 1
Query:   49 KFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWA 699
            K   + +  +M  P  IRN+ ++AH+DHGK+TL+D+L++ AG+I++E+AG     D+  +E  RGITI ++ +S+ +E             +G EYLIN+ID+PGHVDF  +VT A+R  DGA+VVVD +EG   QTETVLRQAL E++ PVL +NK+DR   EL+VD  E      KVI+  N +I    ED      ++   KGTVAF + L+ WA
Sbjct:    5 KKMVDRVSELMSQPKFIRNIGIVAHIDHGKTTLSDNLLSGAGMISEELAGRQLFMDSDAEEQARGITIDASNVSMVHEY------------EGQEYLINMIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQALKEQVVPVLFINKVDRLINELKVDEMEMQVRLAKVIDKVNKLIKGMNEDMYNNGWKLDAAKGTVAFGSALYNWA 210          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.641e-44
Identity = 93/216 (43.06%), Postives = 136/216 (62.96%), Query Frame = 1
Query:   64 ELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            +++ +M  P  IRNM + AH+DHGK+TL+D+L+A AG+I++E+AG   + D  + E  RGITI +  +S+ +              +G EYLINLID+PGHVDF  +VT A+R  DGA++VVD +EGV  QTETVLRQAL E ++PVL +NK+DR   EL++   E    F K+I + N ++  Y  +       V  E G+VAF +  + WA ++
Sbjct:   10 KIKELMTQPERIRNMGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVSMVHTY------------EGKEYLINLIDTPGHVDFGGDVTRAMRAIDGAIIVVDAVEGVMPQTETVLRQALREYVKPVLFINKVDRLIKELKLGPNEILNRFAKIITDVNRLIKRYAPEEFKNQWLVKVEDGSVAFGSAYYNWALSV 213          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.144e-44
Identity = 94/222 (42.34%), Postives = 142/222 (63.96%), Query Frame = 1
Query:   61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAK 723
            E+  RI++    +RN+ ++AH+DHGK+TL+D+L+A AG++++E+AG   + D  + E  RGITI            +AA+ S     QG EYLINLID+PGHVDF  +VT A+R  DG +VVVD +EGV  QTETV+RQAL E ++PVL +NK+DR   EL+++ +E  + F K+I + N +++ Y         QV  + G VAF +  + WA ++ + A+
Sbjct:    9 EKALRIVEHTELVRNIGIVAHIDHGKTTLSDNLIAGAGMMSEELAGKQLVLDYDEQEQARGITI------------NAAVASMVHAFQGKEYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDSVEGVMPQTETVIRQALREYVKPVLFINKIDRLINELRLNSDEMQKRFTKIISDVNKLISKYAPKEFTKEWQVSVQDGKVAFGSAYNNWAISVPSMAE 218          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.144e-44
Identity = 95/218 (43.58%), Postives = 141/218 (64.68%), Query Frame = 1
Query:   61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATY-EDPLLGHVQVY-PEKGTVAFSAGLHGWAFTL 708
            E++ +IM     +RN+ +IAHVDHGK+T +D+L+A AGI++ ++AG+ R  D    E +RGIT+K+  +SLY+E             +G  Y+INLID+PGHVDFS +VT +LR+ DGA++VVD +EGV  QTETVLRQAL E +RP+L +NK+DR   EL++  +E  Q   ++I++ N  + T+  DP +    +  P KG VA  +    W  T+
Sbjct:    8 EDILKIMRNVEQVRNIGIIAHVDHGKTTTSDALLAHAGILSPKLAGEARALDYLDVEQQRGITVKAANVSLYHEY------------KGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAILVVDAVEGVMTQTETVLRQALEELVRPLLFINKVDRLIKELKLSPQEIQQRIVQIIKDVNERILTFAPDPEIAKKWLLDPAKGHVALGSAKDKWGITI 213          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_SULIL3.307e-4540.24Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIK3.307e-4540.24Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_SULIA3.307e-4540.24Elongation factor 2 OS=Sulfolobus islandicus (stra... [more]
EF2_THEGJ4.319e-4543.06Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_NANEQ5.641e-4541.59Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_METTP1.257e-4444.80Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_METPE1.257e-4444.50Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_THEON1.641e-4443.06Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_THEVO2.144e-4442.34Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_IGNH42.144e-4443.58Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
back to top