DY260199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 7.624e-42 Identity = 97/219 (44.29%), Postives = 136/219 (62.10%), Query Frame = 1 Query: 61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVI---MATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708 E+++ +M+ IRNM + AH+DHGK+TL+D+L+A AG+I++E+AGD D ++EA RGITI + +S+ +E G EYLINLID+PGHVDF +VT A+R DGA+VV +EGV QTETVLRQAL E+++PVL +NK+DR EL++ EE F K+I N + MA E V G VAF + + WA ++ Sbjct: 9 EKVKTLMEKHDQIRNMGICAHIDHGKTTLSDNLLAGAGMISKELAGDQLALDFDEEEAARGITIYAANVSMVHEYG------------GKEYLINLIDTPGHVDFGGDVTRAMRAIDGAVVVCCAVEGVMPQTETVLRQALKEKVKPVLFINKVDRLINELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVV--TGKVAFGSAYNNWAISV 213
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.101e-40 Identity = 93/223 (41.70%), Postives = 133/223 (59.64%), Query Frame = 1 Query: 43 MVKFT-AEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708 MV+F E+ +IM IRN+ + AHVDHGK+TL+DSL++AAG++++++AG D E +R +T+K+ SLY+E +G YLINLID+PGHVDF S+ ALR+ DGA+VVVD +EGV QTE LR AL ER+RPVL +NK+DR EL+ E Q +++++ N ++ATY D + AF + W T+ Sbjct: 1 MVRFKQTSEVLKIMRNIEQIRNIGITAHVDHGKTTLSDSLLSAAGLLSEKIAGQALALDYLDVEQKRQMTVKAANASLYHEY------------KGKPYLINLIDTPGHVDFQSKTIRALRVIDGAIVVVDAVEGVMTQTEMYLRVALEERVRPVLFINKIDRLIKELR-SPNEIQQRLVQIVKDVNTLIATYADKEFQKAWLLDPMKGQAFGSARDRWGLTI 210
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.998e-38 Identity = 94/219 (42.92%), Postives = 128/219 (58.45%), Query Frame = 1 Query: 52 FTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFT 705 FT EE HN + H +TL+D L+A AG+I++E+AGD + D + E ERGITI + +S+ +E +G EYLINLID+PGHVDFS +VT A+R DGA+VVV +EGV QTETVLRQAL ER+RPVL +NK+DR EL++ EE F ++I N +I + +V E G+VAF + +GW + Sbjct: 539 FTVEE-------HHNFAAEGFVVH----NTTLSDQLLAGAGMISEELAGDQLVLDFDEMEQERGITIDAANVSMVHEY------------EGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALRERVRPVLYINKVDRLINELKLSPEEMQNRFLEIISEVNKMIEQMAPEEFKDEWKVSVEDGSVAFGSAYYGWGIS 734
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.702e-33 Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y ++ + P G V FS+ + FTL +FAK+YA FG ++ + +R G+ P+ +++ Sbjct: 107 QTLPVTVYEMDSLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33 Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y ++ + P G V FS+ + FTL +FAK+YA FG ++ + +R G+ P+ +++ Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33 Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y ++ + P G V FS+ + FTL +FAK+YA FG ++ + +R G+ P+ +++ Sbjct: 106 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 355
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33 Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G YL N++D+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y ++ + P G V FS+ + FTL +FAK+YA FG ++ + +R G+ P+ +++ Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 6.469e-33 Identity = 82/263 (31.18%), Postives = 146/263 (55.51%), Query Frame = 1 Query: 31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813 +++ + + + L +MD IRN+++ H+ HGK+ D L+ I + D+ TD E ERG+ IKST +++ T +G +L N+ID+PGHV+FS EVTA LRI+DG ++ +D EGV + TE +++ A+ ER+ + +NK+DR LEL++ +AY + +++ N +++ Y ++ + P G V FS+ + FTL +FAK+YA +G ++ + +R G+ P+ +++ Sbjct: 107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTIVLPDT-----------KGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLVLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKF 356
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.823e-27 Identity = 82/232 (35.34%), Postives = 125/232 (53.88%), Query Frame = 1 Query: 94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQF-GVDESKMMERPGGE 783 ++R+ V H+ HGKS L D LV + +R TDT E ER ++IKST ++L A+ KG+ + ID+PGHVDF EV A + I+DG ++VVD IEGV + T +++ A+ + VL +NK+DR LEL++ +AY + VI+ N + L +V PE G V F++ G+ FTL++FAK+Y + G+D +R G+ Sbjct: 139 DVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTL-------AVSDMKGKT----FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKDL--KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGD 357
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 3.438e-26 Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1 Query: 94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 576 NIRN++VIAHVDHGK+TL D L++ +G ++ D R+ D+ E ERGITI S ++YY+ T IN+ID+PGH DF EV L++ DG L++VD EGV QT+ V+++AL I P++ VNK+D+ E +E + F Sbjct: 3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147 The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bpback to top |