DY260199

Overview
NameDY260199
Unique NameDY260199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.624e-42
Identity = 97/219 (44.29%), Postives = 136/219 (62.10%), Query Frame = 1
Query:   61 EELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVI---MATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            E+++ +M+    IRNM + AH+DHGK+TL+D+L+A AG+I++E+AGD    D  ++EA RGITI +  +S+ +E              G EYLINLID+PGHVDF  +VT A+R  DGA+VV   +EGV  QTETVLRQAL E+++PVL +NK+DR   EL++  EE    F K+I   N +   MA  E        V    G VAF +  + WA ++
Sbjct:    9 EKVKTLMEKHDQIRNMGICAHIDHGKTTLSDNLLAGAGMISKELAGDQLALDFDEEEAARGITIYAANVSMVHEYG------------GKEYLINLIDTPGHVDFGGDVTRAMRAIDGAVVVCCAVEGVMPQTETVLRQALKEKVKPVLFINKVDRLINELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEWLCDVV--TGKVAFGSAYNNWAISV 213          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.101e-40
Identity = 93/223 (41.70%), Postives = 133/223 (59.64%), Query Frame = 1
Query:   43 MVKFT-AEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTL 708
            MV+F    E+ +IM     IRN+ + AHVDHGK+TL+DSL++AAG++++++AG     D    E +R +T+K+   SLY+E             +G  YLINLID+PGHVDF S+   ALR+ DGA+VVVD +EGV  QTE  LR AL ER+RPVL +NK+DR   EL+    E  Q   +++++ N ++ATY D       +       AF +    W  T+
Sbjct:    1 MVRFKQTSEVLKIMRNIEQIRNIGITAHVDHGKTTLSDSLLSAAGLLSEKIAGQALALDYLDVEQKRQMTVKAANASLYHEY------------KGKPYLINLIDTPGHVDFQSKTIRALRVIDGAIVVVDAVEGVMTQTEMYLRVALEERVRPVLFINKIDRLIKELR-SPNEIQQRLVQIVKDVNTLIATYADKEFQKAWLLDPMKGQAFGSARDRWGLTI 210          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.998e-38
Identity = 94/219 (42.92%), Postives = 128/219 (58.45%), Query Frame = 1
Query:   52 FTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENAN-VIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFT 705
            FT EE        HN      + H     +TL+D L+A AG+I++E+AGD  + D  + E ERGITI +  +S+ +E             +G EYLINLID+PGHVDFS +VT A+R  DGA+VVV  +EGV  QTETVLRQAL ER+RPVL +NK+DR   EL++  EE    F ++I   N +I     +      +V  E G+VAF +  +GW  +
Sbjct:  539 FTVEE-------HHNFAAEGFVVH----NTTLSDQLLAGAGMISEELAGDQLVLDFDEMEQERGITIDAANVSMVHEY------------EGEEYLINLIDTPGHVDFSGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALRERVRPVLYINKVDRLINELKLSPEEMQNRFLEIISEVNKMIEQMAPEEFKDEWKVSVEDGSVAFGSAYYGWGIS 734          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.702e-33
Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y      ++ + P  G V FS+  +   FTL +FAK+YA  FG ++  +  +R  G+    P+ +++
Sbjct:  107 QTLPVTVYEMDSLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y      ++ + P  G V FS+  +   FTL +FAK+YA  FG ++  +  +R  G+    P+ +++
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y      ++ + P  G V FS+  +   FTL +FAK+YA  FG ++  +  +R  G+    P+ +++
Sbjct:  106 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 355          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.793e-33
Identity = 83/263 (31.56%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  YL N++D+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y      ++ + P  G V FS+  +   FTL +FAK+YA  FG ++  +  +R  G+    P+ +++
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDT-----------KGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKF 356          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.469e-33
Identity = 82/263 (31.18%), Postives = 146/263 (55.51%), Query Frame = 1
Query:   31 ESVKMVKFTAEELRRIMDFPHNIRNMSVIAHVDHGKSTLTDSLVAAAGI-IAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQFG-VDESKMMERPGGENLL*PRLQEW 813
            +++ +  +  + L  +MD    IRN+++  H+ HGK+   D L+      I +    D+  TD    E ERG+ IKST +++    T           +G  +L N+ID+PGHV+FS EVTA LRI+DG ++ +D  EGV + TE +++ A+ ER+   + +NK+DR  LEL++   +AY   + +++  N +++ Y      ++ + P  G V FS+  +   FTL +FAK+YA  +G ++  +  +R  G+    P+ +++
Sbjct:  107 QTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTIVLPDT-----------KGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTD--ENLVLSPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKF 356          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.823e-27
Identity = 82/232 (35.34%), Postives = 125/232 (53.88%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG-DVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQKVIENANVIMATYEDPLLGHVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASQF-GVDESKMMERPGGE 783
            ++R+  V  H+ HGKS L D LV       +      +R TDT   E ER ++IKST ++L       A+   KG+     +    ID+PGHVDF  EV A + I+DG ++VVD IEGV + T  +++ A+   +  VL +NK+DR  LEL++   +AY   + VI+  N  +      L    +V PE G V F++   G+ FTL++FAK+Y  +  G+D     +R  G+
Sbjct:  139 DVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTL-------AVSDMKGKT----FAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINTTRIIKHAILHDMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQISKDL--KYRVSPELGNVCFASCDLGYCFTLSSFAKLYIDRHGGIDVDLFSKRLWGD 357          
BLAST of DY260199 vs. ExPASy Swiss-Prot
Match: TYPA_HELPY (GTP-binding protein TypA/BipA homolog OS=Helicobacter pylori GN=typA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.438e-26
Identity = 66/161 (40.99%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   94 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMTDAALKSFKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTF 576
            NIRN++VIAHVDHGK+TL D L++ +G  ++    D R+ D+   E ERGITI S   ++YY+ T                 IN+ID+PGH DF  EV   L++ DG L++VD  EGV  QT+ V+++AL   I P++ VNK+D+   E     +E +  F
Sbjct:    3 NIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTAIYYKDTK----------------INIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGICPIVVVNKIDKPAAEPDRVVDEVFDLF 147          
The following BLAST results are available for this feature:
BLAST of DY260199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_METM77.624e-4244.29Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_DESMO1.101e-4041.70Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_METKA2.998e-3842.92Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
U5S1_BOVIN1.702e-3331.56116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB3.793e-3331.56116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE3.793e-3331.56116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN3.793e-3331.56116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK6.469e-3331.18116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO1.823e-2735.34114 kDa U5 small nuclear ribonucleoprotein compone... [more]
TYPA_HELPY3.438e-2640.99GTP-binding protein TypA/BipA homolog OS=Helicobac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260199 ID=DY260199; Name=DY260199; organism=Citrus clementina; type=EST; length=1029bp
AGAAATACTGTCCTTGTTGGTAATATTTGAGAATCAGTCAAGATGGTGAA
GTTCACAGCAGAAGAGCTCCGGCGTATTATGGACTTCCCACATAACATCC
GCAATATGTCTGTTATTGCCCATGTTGATCATGGGAAGTCAACCCTTACC
GACTCTCTTGTGGCTGCTGCTGGTATTATCGCCCAAGAAGTTGCTGGCGA
TGTCCGTATGACAGATACTCGTCAGGATGAAGCTGAGCGTGGTATTACAA
TCAAGTCTACTGGTATATCTCTCTACTACGAGATGACTGATGCGGCTTTG
AAGAGCTTCAAGGGAGAGCGTCAAGGGAATGAATACCTCATCAACCTTAT
TGATTCCCCTGGGCACGTCGATTTCTCATCTGAGGTTACAGCTGCCCTTC
GTATCACTGATGGTGCACTTGTGGTCGTAGACTGCATTGAAGGTGTTTGT
GTCCAAACAGAAACTGTGCTTAGACAAGCCCTGGGTGAAAGGATTAGGCC
AGTCTTGACTGTGAACAAGATGGACAGGTGCTTCCTTGAGCTTCAGGTTG
ACGGTGAAGAGGCTTACCAGACTTTCCAGAAAGTGATTGAGAATGCTAAT
GTCATTATGGCTACCTATGAAGATCCCCTCCTTGGCCATGTTCAGGTTTA
CCCTGAAAAGGGAACAGTTGCTTTCTCTGCTGGTTTGCATGGCTGGGCCT
TTACCCTGACAAATTTTGCCAAGATGTATGCCTCCCAGTTCGGAGTTGAT
GAGTCAAAGATGATGGAGAGGCCCGGGGGTGAGAACCTCCTTTGACCCCG
CCTCCAGGAATGGGACCCACCAGAACCACTGGCCCCCCCCCCTTGCAAGC
CTGGGTTTGGTCCCGTTCCCGCCAAGAAACCCCCCAAGCCAAAATCCCCC
ACCTTTTGCCTGAATGAGGGAAAAAAAAAAAACCCGGGGGCCTTAAGTTT
CCAAAAGCCTGGGTGGCCCCCGATGGAAAGTTCCCAAAGAAAAAAGAGAT
TGGAAGGGGTAAAGGGCATTTGGACGAAC
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