DY260204

Overview
NameDY260204
Unique NameDY260204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.112e-48
Identity = 53/71 (74.65%), Postives = 57/71 (80.28%), Query Frame = 1
Query:   43 KVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            KVFF +  G  P GR V EL+ D+ P+TAENF ALCTGEKGIGKSGKPLHYKGSSFHRVI  FM QGGDFT
Sbjct:    8 KVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFT 78          

HSP 2 Score: 100.523 bits (249), Expect = 2.112e-48
Identity = 54/96 (56.25%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  260 GNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCRPL 544
            G G GG+SIYG  F DENF+ KH   G LSMANAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DC  L
Sbjct:   80 GTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.898e-46
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 2
Query:  260 GNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIA 529
            G+GTGG+SIYGSKF DENF  KHTGPG+LSMANAG  TNGSQFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P+ IA
Sbjct:  117 GDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIA 207          

HSP 2 Score: 76.6406 bits (187), Expect = 1.898e-46
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 VFFPLINPSKMP--NPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            V  P ++ +K P    KV+F +  GG P GR VM L+    P+TAENF AL TG+   G+      Y+GSSFHR+I  FM QGGDFT
Sbjct:   30 VLSPGVDAAKGPVITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGED-LGYGYEGSSFHRIIKNFMIQGGDFT 115          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.176e-46
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 2
Query:  239 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADC 535
            +G    A +GTGG+SIYG KF DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVFG+V +GM VV++IE V        ++ VVI DC
Sbjct:   71 QGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDC 170          

HSP 2 Score: 95.1301 bits (235), Expect = 4.176e-46
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   31 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            M   K F  +++GG   GR V+EL+ DV P+TAENF  LCTGEKG+G  +G PLHYKG+ FHRVI GFM QGGD +
Sbjct:    1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDIS 76          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 4.221e-46
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  260 GNGTGGQSIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADC 535
            G+GTG  +IYG+ KF+DENF  +H  PG+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQV++GMD+V+ IE   ++  + N+ VVI  C
Sbjct:   88 GDGTGSCTIYGTPKFSDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQC 180          

HSP 2 Score: 94.3597 bits (233), Expect = 4.221e-46
Identity = 46/72 (63.89%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   37 NPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDF 252
            NP VFF + +GG P GR  +ELFADVTPRTAENF   CTGE    + G+P  YKGS FHRVI  FM QGGDF
Sbjct:   15 NPIVFFDVALGGEPLGRLKLELFADVTPRTAENFRQFCTGESK-NQQGRPQGYKGSKFHRVIKDFMIQGGDF 85          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.170e-46
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  260 GNGTGGQSIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADC 535
            G+GTG  +IYG+ KFADENFV KH   G+LSMAN+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ IE   +   + ++ V+I  C
Sbjct:   86 GDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQC 178          

HSP 2 Score: 95.1301 bits (235), Expect = 7.170e-46
Identity = 48/77 (62.34%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   22 PSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDF 252
            P+   NP VFF + +GG P GR  MELFADVTPRTAENF   CTGE      GKP  YK S FHRVI  FM QGGDF
Sbjct:    8 PATNTNPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDF 83          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.252e-46
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   31 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGK-SGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            M NP+VFF + V G   GR V+ELFAD  P+TAENF ALCTGEKGIGK S  PLHYKGS FHR+I GFMCQGGDFT
Sbjct:    1 MINPRVFFDIDVDGNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFT 76          

HSP 2 Score: 92.8189 bits (229), Expect = 9.252e-46
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 2
Query:  266 GTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE-KVGSSSGRTNKPVVIADCRPL 544
            G GG+SIYG+ F DE+F +KH   G+LSMAN GP T  SQFF+ T  T  LDGKHVVFG+VV G +VV+ +E +      R    V+IA+C  L
Sbjct:   80 GKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMIANCGEL 173          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.204e-45
Identity = 59/109 (54.13%), Postives = 75/109 (68.81%), Query Frame = 2
Query:  233 CARGE-TSPAGN-GTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV---VIADCRPL 544
            C  G+ T+P+ + GTGG+SIYG KF DENF   H  P +LSMAN+GP TNGSQFF+ T  T  LDGKHVVFG+V+EG  +V+ +E+  S  G  ++PV    IADC  L
Sbjct:   70 CQGGDFTAPSDHLGTGGESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLER--SEKGANDRPVEDWKIADCGEL 176          

HSP 2 Score: 94.3597 bits (233), Expect = 1.204e-45
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   46 VFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            V+F ++  G P GR V +L+ DV P+TA NF +LCTG+KGI  KSGKPL YK S FHRVI  FMCQGGDFT
Sbjct:    6 VYFDISCNGKPKGRVVFKLYDDVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFT 76          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.042e-45
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 2
Query:  224 PDSCARGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            P    +G    AGNGTGG+SIYG+KFADENF+KKHTGPGILSMANAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K VV+ DC  LS
Sbjct:   65 PGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          

HSP 2 Score: 142.51 bits (358), Expect = 3.995e-33
Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query:   31 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            MPNP+VFF M+VGG PAGR VMELFAD TPRTAENF ALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQGGDFT
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFT 75          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.068e-45
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 2
Query:  260 GNGTGGQSIYGS-KFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADC 535
            G+GTG ++IYG+ +F DENF+ KH  PG+LSMAN+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  C
Sbjct:   86 GDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQC 178          

HSP 2 Score: 92.0485 bits (227), Expect = 2.068e-45
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   25 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDF 252
            +K PNP VFF +T+GG   GR  MELF  +TPRTAENF   CTGE      G+P  YK S FHRVI  FM QGGDF
Sbjct:    9 AKTPNPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDF 83          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.900e-45
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  260 GNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADC 535
            G+GTGG+SIYG KF DENF +KH  P +LSMANAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AIE+  +++ R    V I  C
Sbjct:   80 GDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDAC 171          

HSP 2 Score: 92.8189 bits (229), Expect = 5.900e-45
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1
Query:   43 KVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKG--IGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            K +F +++GG PAGR V E+++DVTP+TAENF  LC G+ G    K G PL Y+GS FHRVI GFMCQ GDFT
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFT 78          
The following BLAST results are available for this feature:
BLAST of DY260204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPID_DICDI2.112e-4874.65Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
PPIB_CRYNE1.898e-4669.23Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYP40_ARATH4.176e-4657.00Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPIH_EMENI4.221e-4655.91Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIH_ASPFU7.170e-4656.99Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
CYP11_RHIOR9.252e-4672.37Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
PPID_CANAL1.204e-4554.13Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
CYPH_CATRO2.042e-4581.48Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
PPIH_ASPOR2.068e-4556.99Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_ASHGO5.900e-4558.70Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260204 ID=DY260204; Name=DY260204; organism=Citrus clementina; type=EST; length=1066bp
GTTTTTTTCCCCCTCATCAACCCATCCAAAATGCCAAACCCCAAAGTGTT
CTTCCACATGACCGTCGGCGGTCCGCCCGCCGGCAGGTTCGTGATGGAGC
TCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCCCGCCCTCTGC
ACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGGG
CTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACT
TCACCCGCCGGAAACGGAACCGGAGGCCAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCCGTCCATTGTCTTAG
ATTTGATCCTGATAATGATCGCCCTCATCCACAGCCGTCTGATCGCGATC
GTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCCGTAGGACTT
TTAATCTTTATCTAATTTTCCCGCCATGTTCCTTGTTCCGGTTGGATCGG
GTCTCCCGTGGTGGTTCCTGAAGAACTGTTTTTTATGTCCTTCCATGAGC
CGCCTTTTTAAATAAAACAAGGCCTTGTCCCTGTAAATTAAAAAAAAAAA
AAAAAAAAAAACCCCAACTTCCTTGTACAAAGTTGGGACTAAAAAAAAAA
CCTTGCCTTATCATCTTTTTCCCCCAACCGGGTCCCCATCCCCCCCACTT
AAAATTCCTTTATTTCCCCACCCCCCCTAAACCCCCCCCAAAACCAGTCC
CTAATACACGGGCCCATAGCCCGTTTCCCCGGGCCCCCCCCGCCCCGCTC
TTCCCCAAATCCCCCGCAAGTTTTCCTTCGGCCTAGAATACCAAAAATCT
CTCCCTCGCTCTTCAA
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