DY260204

Overview
NameDY260204
Unique NameDY260204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CWC27_RHIOR (Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae GN=cwc27 PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.810e-13
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV 448
            P G G GG+S+Y   F DE   + +    G++ +AN G   NGSQFF+   + + L  +H +FG+V
Sbjct:   68 PTGTGQGGESVYEDGFPDEFHSRLRFNRRGLVGVANTGQNDNGSQFFITLDRADELTKRHTLFGRV 133          

HSP 2 Score: 44.669 bits (104), Expect = 1.810e-13
Identity = 26/73 (35.62%), Postives = 34/73 (46.58%), Query Frame = 1
Query:   37 NPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            N KV  H T     +G   +EL+    PR   NF  LC             +Y  + FHR++PGF+ QGGD T
Sbjct:   12 NAKVILHTT-----SGDIEIELWGKEAPRATRNFIQLCLEG----------YYDNTIFHRIVPGFLVQGGDPT 69          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIL4_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus musculus GN=Ppil4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGQVVEGMDVVKAIEK 484
            P G G GG+SI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG+V EGMD+VK I +
Sbjct:   56 PTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIVKKINE 141          

HSP 2 Score: 26.1794 bits (56), Expect = 3.973e-13
Identity = 18/58 (31.03%), Postives = 24/58 (41.38%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            G  V++L+ +  PR   NF  LC          K  +Y     H V   F+ Q GD T
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPT 57          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIL4_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo sapiens GN=PPIL4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.159e-13
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADE-NFVK-------KHTGPGILSMANAGPGTNGSQFFVCTAKT-EWLDGKHVVFGQVVEGMDVVKAIEK 484
            P G G GG+SI+G  + D+ +F +       KH   G +SM N G   +GSQF + T +  ++LDG H VFG+V EGMD++K I +
Sbjct:   56 PTGTGRGGESIFGQLYGDQASFFEAEKVPRIKHKKKGTVSMVNNGSDQHGSQFLITTGENLDYLDGVHTVFGEVTEGMDIIKKINE 141          

HSP 2 Score: 26.1794 bits (56), Expect = 5.159e-13
Identity = 18/58 (31.03%), Postives = 24/58 (41.38%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            G  V++L+ +  PR   NF  LC          K  +Y     H V   F+ Q GD T
Sbjct:   10 GDVVIDLYTEERPRACLNFLKLC----------KIKYYNYCLIHNVQRDFIIQTGDPT 57          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIL3_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspergillus fumigatus GN=cyp10 PE=3 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 5.309e-13
Identity = 25/58 (43.10%), Postives = 31/58 (53.45%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            G   +ELF +  P+TAENF ALC              Y  + FHR+ PGFM QGGD +
Sbjct:   10 GDLKVELFCEAVPQTAENFLALCACGA----------YNNTPFHRIFPGFMIQGGDIS 57          

HSP 2 Score: 46.2098 bits (108), Expect = 5.309e-13
Identity = 36/108 (33.33%), Postives = 47/108 (43.52%), Query Frame = 2
Query:  272 GGQSIYGSKFADENF---VKKHTGPGILSMAN--------------AGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV------EGMDVVKAIEKVG---SSSGRTNKP 517
            GG SIY  +  ++       +H   GILSMA+               G   NGSQFF+  A    LDG   VFG+V+      EG DV+  +EK        GR  +P
Sbjct:   80 GGTSIYHPRALNQEIHLPALRHNARGILSMASRPVKDRTAPGSQGATGATVNGSQFFITFAAAPHLDGASTVFGKVLNLSPQDEGGDVLSKLEKAKLKVDKKGRVTQP 187          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CWC27_NEUCR (Peptidyl-prolyl isomerase cwc-27 OS=Neurospora crassa GN=cwc-27 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.013e-12
Identity = 36/108 (33.33%), Postives = 48/108 (44.44%), Query Frame = 2
Query:  254 PAGNGTGGQSIY-------------------------GSKFADENFVK-KHTGPGILSMANAG-PGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS 496
            P+G G GG+SIY                         G  F DE   + K    G+L MAN G P TN SQFF    K + L GK+ +FG+V    D +  + K+G +
Sbjct:   68 PSGTGHGGESIYDNGALSGDLDPWPMDQRRGKNAGPHGVNFKDEFHSRLKFNRRGLLGMANEGAPDTNSSQFFFTLGKADELTGKNTMFGRVAG--DTIYNLAKIGEA 173          

HSP 2 Score: 43.8986 bits (102), Expect = 7.013e-12
Identity = 27/79 (34.18%), Postives = 33/79 (41.77%), Query Frame = 1
Query:   13 LINPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGD 249
            + N    P      H T      G   +ELFA  TP T  NF  L              +Y  + FHR+IPGF+ QGGD
Sbjct:    4 IYNLEPQPTASAIIHTT-----QGEIAVELFAKQTPLTCRNFLQLALDG----------YYDNTIFHRLIPGFIVQGGD 67          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIA_HELPY (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori GN=ppiA PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.612e-11
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEK 484
            P G GTGG   +  K    +   KH   G +SMA+AG  T GSQFF+C      LDG+H VFG++   EG+ V+  I++
Sbjct:   74 PYGTGTGGPG-HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEGLSVLDKIKQ 150          

HSP 2 Score: 37.3502 bits (85), Expect = 1.612e-11
Identity = 21/55 (38.18%), Postives = 25/55 (45.45%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGG 246
            G   +ELF    P+   NF  L           K   Y G +FHRVI GF+ QGG
Sbjct:   28 GNIALELFYKDAPQAVSNFVTLA----------KEGFYNGLNFHRVIAGFVAQGG 72          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIB_BACSU (Peptidyl-prolyl cis-trans isomerase B OS=Bacillus subtilis GN=ppiB PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.634e-11
Identity = 32/73 (43.84%), Postives = 38/73 (52.05%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVK 472
            P G GTGG   Y  K   E     H   G LSMA+AG  T GSQFF+       L+G H VFG+V  G++  K
Sbjct:   58 PHGTGTGGPG-YTIKCETEGNPHTHEA-GALSMAHAGKDTGGSQFFIVHEPQPHLNGVHTVFGKVTSGLEFAK 128          

HSP 2 Score: 37.3502 bits (85), Expect = 1.634e-11
Identity = 21/50 (42.00%), Postives = 26/50 (52.00%), Query Frame = 1
Query:   97 ELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGG 246
            EL+ +  P T  NF  L    +G         Y G +FHRVIPGF+ QGG
Sbjct:   17 ELYPEAAPGTVANFEKLAN--EGF--------YDGLTFHRVIPGFVSQGG 56          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: CWC27_CRYNE (Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans GN=CWC27 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.593e-11
Identity = 31/92 (33.70%), Postives = 46/92 (50.00%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVK-KHTGPGILSMANAGP-GTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVV 523
            P G G GG+S YG  F DE   + K    G+L MAN G   +N SQFF+       L  KH +FG++V G  +   +      + +  +P++
Sbjct:   68 PTGTGMGGESFYGEPFEDEIHGRLKFNRRGLLGMANNGSRNSNTSQFFITLDAAPELTNKHTMFGKIV-GNTIFNVLNIGNLDTDKEERPLI 158          

HSP 2 Score: 38.1206 bits (87), Expect = 2.593e-11
Identity = 22/59 (37.29%), Postives = 28/59 (47.46%), Query Frame = 1
Query:   79 AGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            AG   +EL+    P+   NF AL              +Y G  FHRV+PGF+ Q GD T
Sbjct:   21 AGEIEVELWGKECPKAVRNFLALTMEG----------YYDGVIFHRVVPGFIIQSGDPT 69          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPI_SYNE7 (Peptidyl-prolyl cis-trans isomerase OS=Synechococcus elongatus (strain PCC 7942) GN=rot PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 3.570e-11
Identity = 34/77 (44.16%), Postives = 40/77 (51.95%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVV--EGMDVVKAI 478
            P G GTGG    G K   E     H   G LSMA+AG  T GSQFF+C      LDG H  FGQ    E + VV+++
Sbjct:   57 PHGTGTGGP---GYKIPCEINDNPHLA-GTLSMAHAGRNTGGSQFFICHEPQPHLDGVHTTFGQTEDDESLKVVRSL 129          

HSP 2 Score: 37.3502 bits (85), Expect = 3.570e-11
Identity = 22/55 (40.00%), Postives = 27/55 (49.09%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGG 246
            G   ++ F +  P T  NF  L   + G         Y G +FHRVIPGFM QGG
Sbjct:   11 GTIRLQFFDNDAPNTVANFVKL--SQDGF--------YDGLTFHRVIPGFMSQGG 55          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIA_HELPJ (Peptidyl-prolyl cis-trans isomerase OS=Helicobacter pylori J99 GN=ppiA PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 7.737e-11
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2
Query:  254 PAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQV--VEGMDVVKAIEK 484
            P G GTGG   +  K    +   KH   G +SMA+AG  T GSQFF+C      LDG+H VFG++   E + V+  I++
Sbjct:   73 PYGTGTGGPE-HRIKCEVAHNPNKHQR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAESLSVLDKIKQ 149          

HSP 2 Score: 37.3502 bits (85), Expect = 7.737e-11
Identity = 21/55 (38.18%), Postives = 25/55 (45.45%), Query Frame = 1
Query:   82 GRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGG 246
            G   +ELF    P+   NF  L           K   Y G +FHRVI GF+ QGG
Sbjct:   27 GNITLELFYKDAPQAVSNFVTLA----------KEGFYNGLNFHRVIAGFVAQGG 71          
The following BLAST results are available for this feature:
BLAST of DY260204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
CWC27_RHIOR1.810e-1337.88Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae... [more]
PPIL4_MOUSE3.973e-1343.02Peptidyl-prolyl cis-trans isomerase-like 4 OS=Mus ... [more]
PPIL4_HUMAN5.159e-1341.86Peptidyl-prolyl cis-trans isomerase-like 4 OS=Homo... [more]
PPIL3_ASPFU5.309e-1343.10Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspe... [more]
CWC27_NEUCR7.013e-1233.33Peptidyl-prolyl isomerase cwc-27 OS=Neurospora cra... [more]
PPIA_HELPY1.612e-1141.77Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]
PPIB_BACSU1.634e-1143.84Peptidyl-prolyl cis-trans isomerase B OS=Bacillus ... [more]
CWC27_CRYNE2.593e-1133.70Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus ne... [more]
PPI_SYNE73.570e-1144.16Peptidyl-prolyl cis-trans isomerase OS=Synechococc... [more]
PPIA_HELPJ7.737e-1140.51Peptidyl-prolyl cis-trans isomerase OS=Helicobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260204 ID=DY260204; Name=DY260204; organism=Citrus clementina; type=EST; length=1066bp
GTTTTTTTCCCCCTCATCAACCCATCCAAAATGCCAAACCCCAAAGTGTT
CTTCCACATGACCGTCGGCGGTCCGCCCGCCGGCAGGTTCGTGATGGAGC
TCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCCCGCCCTCTGC
ACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGGG
CTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACT
TCACCCGCCGGAAACGGAACCGGAGGCCAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCCGTCCATTGTCTTAG
ATTTGATCCTGATAATGATCGCCCTCATCCACAGCCGTCTGATCGCGATC
GTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCCGTAGGACTT
TTAATCTTTATCTAATTTTCCCGCCATGTTCCTTGTTCCGGTTGGATCGG
GTCTCCCGTGGTGGTTCCTGAAGAACTGTTTTTTATGTCCTTCCATGAGC
CGCCTTTTTAAATAAAACAAGGCCTTGTCCCTGTAAATTAAAAAAAAAAA
AAAAAAAAAAACCCCAACTTCCTTGTACAAAGTTGGGACTAAAAAAAAAA
CCTTGCCTTATCATCTTTTTCCCCCAACCGGGTCCCCATCCCCCCCACTT
AAAATTCCTTTATTTCCCCACCCCCCCTAAACCCCCCCCAAAACCAGTCC
CTAATACACGGGCCCATAGCCCGTTTCCCCGGGCCCCCCCCGCCCCGCTC
TTCCCCAAATCCCCCGCAAGTTTTCCTTCGGCCTAGAATACCAAAAATCT
CTCCCTCGCTCTTCAA
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