DY260219

Overview
NameDY260219
Unique NameDY260219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1043
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: TCMO_POPTM (Trans-cinnamate 4-monooxygenase OS=Populus tremuloides GN=CYP73A13 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.940e-14
Identity = 57/190 (30.00%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  225 PIIGH-LHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKSQCGSVTD----MSKLFFTLANDILCLAAFGMRYVNEEGKKSNNLASVFTESQELLSGF--CIGDFFP 773
            P+ G+ L +  D+ H     LA K G I  L++GQ   VV+SS EL+K VL T    F SR + +     +    D+ F  YG +WR++R+I      ++K V  ++   +EE  +++  VK   G+ T       +L   + N++  +  F  R+ +EE    N L ++  E   L   F    GDF P
Sbjct:   41 PVFGNWLQVGDDLNHRNLTDLAKKFGDILLLRMGQRNLVVVSSPELSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPGAATHGIVLRRRLQLMMYNNMYRI-MFDRRFESEEDPLFNKLKALNGERSRLAQSFDYNYGDFIP 229          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.940e-14
Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  225 PIIGH-LHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKSQCGSVTD----MSKLFFTLANDILCLAAFGMRYVNEEGKKSNNLASVFTESQELLSGF--CIGDFFP 773
            P+ G+ L +  D+ H   +  A K G IF L++GQ   VV+SS ELAK VL T    F SR + +     +    D+ F  YG +WR++R+I      ++K V  ++   +EE  R++  VK    S T+      +L   + N++  +  F  R+ +E+      L ++  E   L  GF    GDF P
Sbjct:   41 PVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESATNGIVLRRRLQLMMYNNMYRI-MFDRRFESEDDPLFVKLKALNGERSRLAQGFEYNYGDFIP 229          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: C76C3_ARATH (Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CYP76C3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.525e-13
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 3
Query:  225 PIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKS--QCGSVTDMSKLFFTLANDILCLAAFGMRYVNEEGKKSN 704
            P++G++  L   PH + AA +   GPI  L+LG++  VVISS E AK  L+THDHV ++R    A +        + +      WR ++K     LLS + + + Q++R  +V+ L++ V    + G   D+++  F  + +I+  A F +     +   S+
Sbjct:   46 PLVGNIFQLGFNPHRSLAAFSKTYGPIMSLKLGRLTAVVISSPEAAKEALRTHDHVMSARTFNDALRAFDHHKHSIVWIPPSARWRFLKKTITKYLLSPQNLDAIQSLRMRKVEELVSLVNEFRERGEAIDLARASFVTSFNIISNALFSVDLATYDSNSSS 207          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: C76B1_HELTU (7-ethoxycoumarin O-deethylase OS=Helianthus tuberosus GN=CYP76B1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.992e-13
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  219 KYPIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLL 575
            + PIIG+LHLL  +PH + A LA   GPI  LQLGQ+ T+VISS+  A+ VLK  D  F++R    A +  +     ++F      WR +R+I  + + S+  + + Q +R ++V+ L+
Sbjct:   34 RLPIIGNLHLLGALPHQSLAKLAKIHGPIMSLQLGQITTLVISSATAAEEVLKKQDLAFSTRNVPDAVRAYNHERHSISFLHVCTEWRTLRRIVSSNIFSNSSLEAKQHLRSKKVEELI 152          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.992e-13
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = 3
Query:  225 PIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKSQCGSVTDMSKLFFTLANDILCLAAFGM 671
            PI G++  L   P+   A L  K GP+  L+LG   T+V+ +++ ++ + K HD  FA+R     +Q  S+    +  A YGP+WR  R+IC  E+   K++   + VR + V  +L  ++ +  S    S +  T     + LA+F M
Sbjct:   43 PIFGNMFELGTEPYKKMAVLRQKYGPVLWLKLGSTYTMVVQTAQASEELFKNHDISFANRVIPDVNQAHSYYQGSLAIAPYGPFWRFQRRICTIEMFVHKKISETEPVRRKCVDNMLKWIEKEANSAEKGSGIEVT---RFVFLASFNM 188          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: CP1A1_OPSTA (Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.601e-13
Identity = 59/201 (29.35%), Postives = 97/201 (48.26%), Query Frame = 3
Query:  225 PIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGS----FQAVRDEE--------VKRLLTSVKSQCGSVTDMSKLFFTLANDILCLAAFGMRYVNEEGKKSNNLASVFTESQELLSGFCIGDFFPQWGWLP 791
            PIIG++  +   P+ T  AL+ + GP+F +Q+G  P VV+S SE  +  L      F+ RP L   Q+IS G S          WR  RK+  + L S   + S    +  + +E         VK+L TS+K+  GS      +  ++AN ++C   FG RY +   ++  +L ++  E  +++    + DF P   +LP
Sbjct:   52 PIIGNVLEIGRKPYQTLTALSKRYGPVFQIQIGMRPVVVLSGSETVRQALIKQGEDFSGRPDLYTFQFISDGKSLAFSTDKVGVWRARRKLAYSALRSFSSLESTNQEYSCMLEEHICKEGEYLVKQLNTSMKAN-GSFDPFRNIVVSVAN-VICGMCFGRRY-DHYDQELVSLVNLSEEFGQVVGTGNLADFIPVLRFLP 249          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.397e-13
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  222 YPIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLT-SVKSQCGSVTDMSKLFFTLAN 641
            +PI+G+L  L + PH  FA LA   G IF L++G    VV S+S  A  +LKTHD + ++R    + +      + + ++     W+ +RK+C TEL + K + S   VR+++ + ++   +K Q   V  +  +F TL N
Sbjct:   36 WPIVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKKCEEMVEYLMKKQGEEVKIVEVIFGTLVN 176          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.397e-13
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 3
Query:  222 YPIIGHLHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLT-SVKSQCGSVTDMSKLFFTLAN 641
            +PI+G+L  L + PH  FA LA   G IF L++G    VV S+S  A  +LKTHD + ++R    + +      + + ++     W+ +RK+C TEL + K + S   VR+++ + ++   +K Q   V  +  +F TL N
Sbjct:   35 WPIVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKKCEEMVEYLMKKQGEEVKIVEVIFGTLVN 175          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: TCMO_POPKI (Trans-cinnamate 4-monooxygenase OS=Populus kitakamiensis GN=CYP73A16 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.437e-13
Identity = 55/190 (28.95%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  225 PIIGH-LHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKSQCGSVTD----MSKLFFTLANDILCLAAFGMRYVNEEGKKSNNLASVFTESQELLSGF--CIGDFFP 773
            P+ G+ L +  D+ H     LA K G IF L++GQ   VV+SS +L+K VL T    F SR + +     +    D+ F  YG +WR++R+I      ++K V  ++   +EE  +++  VK    + T+      +L   + N++  +  F  R+ +E+    N L ++  E   L   F    GDF P
Sbjct:   41 PVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLMMYNNMYRI-MFDRRFESEDDPLFNKLKALNGERSRLAQSFDYNYGDFIP 229          
BLAST of DY260219 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.686e-12
Identity = 56/190 (29.47%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  225 PIIGH-LHLLTDMPHHTFAALADKLGPIFHLQLGQVPTVVISSSELAKLVLKTHDHVFASRPQLIADQYISFGCSDVTFASYGPYWRQVRKICVTELLSSKRVGSFQAVRDEEVKRLLTSVKSQC----GSVTDMSKLFFTLANDILCLAAFGMRYVNEEGKKSNNLASVFTESQELLSGF--CIGDFFP 773
            PI G+ L +  D+ H      A + G IF L++GQ   VV+SS ELAK VL T    F SR + +     +    D+ F  YG +WR++R+I      ++K V  ++   + E + ++  VK+      G +    +L   + N I+    F  R+ +EE      L ++  E   L   F    GDF P
Sbjct:   41 PIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEASVGGIVIRKRLQLMMYN-IMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIP 229          
The following BLAST results are available for this feature:
BLAST of DY260219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
TCMO_POPTM8.940e-1430.00Trans-cinnamate 4-monooxygenase OS=Populus tremulo... [more]
TCMO_CATRO8.940e-1430.53Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C76C3_ARATH1.525e-1329.01Cytochrome P450 76C3 OS=Arabidopsis thaliana GN=CY... [more]
C76B1_HELTU1.992e-1336.977-ethoxycoumarin O-deethylase OS=Helianthus tubero... [more]
C76A2_SOLME1.992e-1330.20Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
CP1A1_OPSTA2.601e-1329.35Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 ... [more]
C80B2_ESCCA3.397e-1331.91(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C80B1_ESCCA3.397e-1331.91(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
TCMO_POPKI4.437e-1328.95Trans-cinnamate 4-monooxygenase OS=Populus kitakam... [more]
TCMO_MEDSA1.686e-1229.47Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YL20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260219 ID=DY260219; Name=DY260219; organism=Citrus clementina; type=EST; length=1043bp
ACACAGTTGTTGCTGCTTGCACTCCCACCATCATTACCAGAGAGAGTAGA
GAACTAGAGAGGGAAAATCCAAGCCGAGAGATGATGGACAGTTTTACCCC
GCAAGTCCTCTTGCCCCTATTCGTAGTCTCCATCATCACTCTCCTATACT
GGAAGTTACTGTCACGGTCGCGGTCACAGCCAGCCACCGCCGCCAACACC
CCACCGTCACCGCCAAATAAGTATCCCATAATCGGTCACCTTCATCTCCT
CACGGACATGCCGCATCATACCTTCGCTGCACTCGCTGACAAACTGGGTC
CGATTTTTCACCTCCAGCTCGGCCAAGTCCCAACCGTAGTGATCTCCTCA
TCGGAACTCGCCAAACTCGTTCTCAAAACCCACGACCACGTCTTCGCCAG
CCGCCCACAACTGATCGCCGATCAGTACATCTCGTTCGGATGCTCCGACG
TCACCTTCGCCTCTTACGGGCCTTACTGGCGCCAAGTTCGTAAGATATGC
GTCACGGAGTTACTGAGCTCGAAACGAGTCGGCTCGTTCCAGGCCGTTCG
GGATGAGGAAGTGAAACGTCTGTTAACGTCGGTGAAAAGCCAGTGCGGGT
CGGTGACAGACATGAGCAAGCTGTTTTTCACGTTAGCTAATGATATACTG
TGCCTTGCAGCTTTTGGGATGAGGTACGTGAACGAGGAAGGTAAAAAGAG
CAACAATTTGGCGAGTGTTTTTACAGAGAGTCAAGAGTTGCTGTCTGGGT
TTTGTATTGGGGATTTTTTCCCCCAGTGGGGTTGGCTCCCCCCCGCTCCC
CGCCACCCCCGAAGGCCGAAGGAAAATAACCCAGAACCGGACGTTGCCTT
TGGTGGAAATATCCGTGAGCCCCCCTTCGGGAACCCGGAACCGAAGGTTC
CGGGGGGTTCTCCTTTATGGGATGGCCATGGCCAAGGCGGAGGGTGATTT
TTTTGCTGTTTTTGCCCAACGGGCCAACCCGGGGAAGACCCCGGGAGGGG
CCCTTTTTCCCCAGAAACCTCCCCCAGGGCCCTCGTTTCGGGG
back to top