DY260220

Overview
NameDY260220
Unique NameDY260220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10291 contig Ccv1_Contig10291:262..1300. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: Y733_CHLP8 (Uncharacterized protein Cpar_0733 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0733 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 8.051e-15
Identity = 49/150 (32.67%), Postives = 77/150 (51.33%), Query Frame = 2
Query:   80 LDTAVDAAKRAGEIIRNGF-YQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPT-----WIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSSQTE 511
            L  A++ A++AG++  + F  ++  V  K     VTE D+  E+LI   +  +FP     GEE           + P+     WI+DP+DGT +F+HG P   + I L +     +GV+  P + EL+    G GAF NG P++VS+  E
Sbjct:    5 LQLALELAEKAGKLTLDYFGRRSLQVFSKRDDTPVTEADRNAEELIRQGISAKFPDDGLFGEE---------FDEHPSGNGRRWIIDPIDGTRSFIHGVPLYGVMIALEVEGAMQLGVINFPALGELYQAERGSGAFMNGSPVQVSAIAE 145          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: SUHB_BACSU (Inositol-1-monophosphatase OS=Bacillus subtilis GN=suhB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.901e-14
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  104 KRAGEIIRNGFYQTKNVEHKGQV-DLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSSQTELVKSL 526
            + AG  I    +++  +E K    DLVT  DK  E    + +++ FP H+ +GEE           +   WI+DP+DGT NFVH      ISIG+       +G++Y+ + DEL+    G+GA+ N   +    +T + +++
Sbjct:   16 REAGARITQSMHESLTIETKSNPNDLVTNIDKETEKFFIDRIQETFPGHRILGEEGQG--DKIHSLEGVVWIIDPIDGTMNFVHQQRNFAISIGIFENGEGKIGLIYDVVHDELYHAFSGRGAYMNETKLAPLKETVIEEAI 155          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: IMPL2_ARATH (Phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.163e-13
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   59 NDSLAKFLDTAVDA--------AKRAGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSSQTEL 514
            N+S ++  DT +D         A  +GE+IR  F +  ++  K  +  VT  D+  E+ + + + Q  P+H   GEE    C   E + +  W++DP+DGT +F+ G P     I L     PI+G++  PI+ E + G++G+    NG+ I   S  +L
Sbjct:   72 NESPSELSDTELDRFAAVGNALADASGEVIRKYFRKKFDIVDKDDMSPVTIADQMAEEAMVSIIFQNLPSHAIYGEEKGWRC--KEESADYVWVLDPIDGTKSFITGKPVFGTLIALLYKGKPILGLIDQPILKERWIGMNGRRTKLNGEDISTRSCPKL 229          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: SUHB_BUCBP (Inositol-1-monophosphatase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=suhB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.382e-13
Identity = 45/152 (29.61%), Postives = 75/152 (49.34%), Query Frame = 2
Query:   80 LDTAVDAAKRAGEIIRNGFYQTKNVEHKGQV---DLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSSQTELVKSL 526
            L+ A+  A++ G I+   +Y      ++ Q+   D +T+     E  + + + + +P H  I   T           E  W+++ LDG  NF +  P  CISI + + K   + V+Y+PI +ELFT V GQG+  NG  ++  S   L +SL
Sbjct:    5 LNIAIRVARKCGNILIQ-YYDRNKTNNEKQILKKDFITKIIFVLEKTMIDMIHKSYPEHSII---TYHKNNKIFKNTEIIWLINALDGIKNFENNLPHFCISIAIIVRKTTQISVIYDPIRNELFTSVKGQGSQLNGYRMRCKSTNTLKRSL 152          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: SUHB_BUCAP (Inositol-1-monophosphatase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=suhB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.974e-12
Identity = 41/151 (27.15%), Postives = 77/151 (50.99%), Query Frame = 2
Query:   80 LDTAVDAAKRAGEIIRNGFYQTKNVEH---KGQV---DLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSSQTEL 514
            L+ A+ A ++ G II   +   K ++    K ++   +++ +T +   ++I+    + +P H  + + T       +      WI++ LDG  NF+  FP  CISI + +     + V+Y+PI ++LFT V GQG+  NG  I+ ++   L
Sbjct:    5 LNIAIRAIRKGGNIIVQNYDTQKFIKEDLDKKKIFIKNIMYKTYRIISEVIY----KSYPNHIILNKNTDLI----KNEKNTLWIINELDGKNNFIKNFPHFCISIAVIMKNNTEISVIYDPIRNDLFTAVKGQGSQLNGYRIRCNNINSL 147          

HSP 2 Score: 26.1794 bits (56), Expect = 3.974e-12
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  615 SLRMSGSCALNLCGIACGRLDLFYE 689
            SLR +GS  L+L  +A GR+D  ++
Sbjct:  180 SLRCTGSTLLDLAYVASGRIDCLFD 204          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: Y4FL_RHISN (Uncharacterized protein y4fL OS=Rhizobium sp. (strain NGR234) GN=NGR_a03700 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.156e-12
Identity = 52/166 (31.33%), Postives = 76/166 (45.78%), Query Frame = 2
Query:   80 LDTAVDAAKR------AGEIIRNGFYQTKNVEHKGQVDLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTG-----VHGQGAFFNGKPIKVSSQTELVKSLPRNRGW 544
            LDT +D  +       A  + R G      +E KG+ D V+  D+  E L    +  QFP    +GEE     G  E+     W++DP+DGT NF+ G P   +SI     K P++G V  P +D L        +HG G+     P+ V +Q  +   + RNR W
Sbjct:    5 LDTRLDLLRNITSKVGAFALARFGNLSHIVIETKGEADYVSAADRDAESLARRLIHAQFPADAIVGEEQL---GDAEVDH---WLIDPIDGTANFLSGIPLWAVSIAFVRNKEPVLGAVALPALDTLLWASVDGPLHGTGSV---SPL-VGAQ-PIAFGIGRNRTW 159          

HSP 2 Score: 22.7126 bits (47), Expect = 5.156e-12
Identity = 11/22 (50.00%), Postives = 13/22 (59.09%), Query Frame = 3
Query:  630 GSCALNLCGIACGRLDLFYELG 695
            GSCA  L  +A GRL  + E G
Sbjct:  182 GSCAAALAMVAAGRLAGYVEHG 203          
BLAST of DY260220 vs. ExPASy Swiss-Prot
Match: SUHB_BUCAI (Inositol-1-monophosphatase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=suhB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.421e-11
Identity = 42/147 (28.57%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   80 LDTAVDAAKRAGEIIRNGFYQTKNVEH---KGQV---DLVTETDKACEDLIFNHLKQQFPTHKFIGEETTAACGATELTDEPTWIVDPLDGTTNFVHGFPFVCISIGLTIGKIPIVGVVYNPIMDELFTGVHGQGAFFNGKPIKVSS 502
            L+ A+ A ++ G  I   + + K V+    K +V   +++ +T+K   ++I     + +P H  + +         E      WI+  LDG TNF+  FP+ C+SI + +     + V+Y+PI ++LFT V GQG+  NG   + S+
Sbjct:    5 LNIAIRAVRKGGNFIIQNYERRKFVKEDVEKNKVFLNNIIYKTNKIISEIIH----KSYPYHTILKKHENILVKKNE--KNTVWIITELDGKTNFLKYFPYFCVSIAVVVKNKTEISVIYDPIKNDLFTAVKGQGSQLNGYRTRCSA 145          
The following BLAST results are available for this feature:
BLAST of DY260220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
Y733_CHLP88.051e-1532.67Uncharacterized protein Cpar_0733 OS=Chlorobaculum... [more]
SUHB_BACSU8.901e-1430.28Inositol-1-monophosphatase OS=Bacillus subtilis GN... [more]
IMPL2_ARATH1.163e-1330.00Phosphatase IMPL2, chloroplastic OS=Arabidopsis th... [more]
SUHB_BUCBP3.382e-1329.61Inositol-1-monophosphatase OS=Buchnera aphidicola ... [more]
SUHB_BUCAP3.974e-1227.15Inositol-1-monophosphatase OS=Buchnera aphidicola ... [more]
Y4FL_RHISN5.156e-1231.33Uncharacterized protein y4fL OS=Rhizobium sp. (str... [more]
SUHB_BUCAI1.421e-1128.57Inositol-1-monophosphatase OS=Buchnera aphidicola ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YL21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260220 ID=DY260220; Name=DY260220; organism=Citrus clementina; type=EST; length=1040bp
CGTTCTTCTCCTCCTTTTTTTAATCCTGTATAATAAAAAATATACCCATA
TGGCACAAAATGATTCCCTTGCAAAGTTCTTGGACACTGCAGTTGATGCA
GCTAAGAGGGCTGGCGAGATAATCCGTAATGGGTTCTATCAAACCAAAAA
TGTGGAGCATAAAGGCCAGGTGGATTTGGTCACAGAAACTGATAAAGCAT
GTGAGGATCTCATATTTAATCATCTCAAGCAGCAATTTCCCACGCATAAG
TTCATTGGAGAAGAAACTACCGCTGCTTGTGGTGCCACAGAGTTGACCGA
TGAACCCACATGGATTGTCGATCCTCTTGATGGAACAACTAACTTTGTGC
ATGGGTTTCCCTTTGTGTGTATCTCTATCGGTCTTACAATTGGAAAGATT
CCTATTGTCGGGGTTGTCTACAATCCAATAATGGATGAGCTTTTTACTGG
AGTCCATGGACAAGGTGCATTTTTTAATGGAAAACCTATAAAAGTATCAT
CTCAAACTGAACTAGTAAAGTCTCTCCCTCGCAACAGAGGCTGGAACAAA
ACGTGATAAGCCAACTCTGGATGCTTCTACAAATAGAATCAATAGCTTGC
TATTCAAGGTGAGATCCCTTCGGATGAGTGGCTCCTGTGCATTGAATCTT
TGTGGAATTGCATGCGGAAGGCTTGATCTGTTTTATGAACTCGGATTTGG
AGGTCCATGGGATGTGGCAGCTGGTGTTGTGATTGTTGAAGAAGCTGGAG
GACTTGTTTATGATCCATCCGGTAACGATTTTGATATCACCCCTCAAAAA
GTTGCAGCTTCCAACCCCCCCGTCAAGGATGCTTTTATGAGGCTTTGCCA
CAATCAAAATGAACCAGCCTTCCAAAAACTTCCCGAAATATCCTGAAAGT
TACTTATTAACCATTAAGGCCCAAAAAATTCCACTTTCCCCCAACCCCCA
AAAAAAAAAGTACCTCTTGATTCTACCCCCCCCGTAGGGGTTTAACCACA
AAACCCTTTTGTAATTATTAATTTAAAAGAAATTTTCAAA
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