DY260221 | Citrus Genome Database

Overview


Name	DY260221
Unique Name	DY260221
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1004

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 46/75 (61.33%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  287 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGGM 511
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

HSP 2 Score: 91.6633 bits (226), Expect = 7.436e-18
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 2

Query:   59 IFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 283
            I VKT TGK I +++E +DTID +K ++++KEGIPP Q RLI+AGKQL D +T  DY I+  S LHLVL LRGG+
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGGL 77

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.943e-19
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

HSP 2 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I L++E +D ++ +K K+++KEGIPP Q RLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I +++E +D ++ +K ++++KEGIPP Q RLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I +++E +D ++ +K ++++KEGIPP Q RLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I +++E +D ++ +K ++++KEGIPP Q RLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I +++E +D ++ +K ++++KEGIPP Q RLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.694e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

HSP 2 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I +++E +D ++ +K ++++KEGIPP Q RLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.436e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

HSP 2 Score: 87.8113 bits (216), Expect = 1.074e-16
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            + + V+T TGK I +++E +DT+D +K +++++EGIPP Q RLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.164e-17
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    YH++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76

HSP 2 Score: 83.1889 bits (204), Expect = 2.645e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M I VKT TGK I L+++ +D +  +K ++++KEGIPP Q RLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76

BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 2

Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGGM 511
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

HSP 2 Score: 84.7297 bits (208), Expect = 9.090e-16
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 2

Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 283
            M I VKT TGK I ++++ +D I  +K ++++KEGIPP Q RLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGGL 77

The following BLAST results are available for this feature:

BLAST of DY260221 vs. ExPASy Swiss-Prot

BLAST of DY260221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96


Match Name	E-value	Identity	Description
RUB2_ARATH	3.943e-19	61.33	NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN...	[more]
NEDD8_CAEEL	3.943e-19	60.53	NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1	[more]
NEDD8_RAT	5.694e-18	56.58	NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1	[more]
NEDD8_RABIT	5.694e-18	56.58	NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1	[more]
NEDD8_MOUSE	5.694e-18	56.58	NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2	[more]
NEDD8_HUMAN	5.694e-18	56.58	NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1	[more]
NEDD8_BOVIN	5.694e-18	56.58	NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1	[more]
RUB3_ORYSJ	7.436e-18	53.95	NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap...	[more]
UBL1_SCHPO	2.164e-17	53.95	Ubiquitin-like protein 1 OS=Schizosaccharomyces po...	[more]
NEDD8_DICDI	8.222e-17	53.25	NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP11YM02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY260221 ID=DY260221; Name=DY260221; organism=Citrus clementina; type=EST; length=1004bp
AACAATTGTAAAGTCTCTCCCGTTGCTCGCTAGATAAACAACCTTTGTCA
ATATGCAGATCTTCGTGAAAACCCCAACCGGCAAAACGATCACTCTCGAA
GTGGAGAGCTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAGGGGATCCCTCCGGATCAGCCGCGTCTGATCTTCGCCGGAAAGCAAC
TCGAAGATGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCAACG
CTCCACCTCGTGCTCAGGCTCCGTGGCGGCATGCAGATCTTCGTCAAAAC
CCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCCGACACGATCG
ATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG
CAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGC
CGATTACCACATCCAAAAAGAATCCCCCTTGCATCTTGTCCTCAGGCTCC
GTGGTGGCATGCAGATCTTCGTCCAAACCCTAACTGGGAAGACGATCCCT
CTCGAGGTGGAGAGTTCCGATACGATTGATAATGTCCAGGCCCAAATCCC
AGACAAGGAAGGGATCCCACCAAATCACCAAAGATTGATCTTCGCCGGGA
AACCATTGGAAAACGGCCCCCCCTTGGCTGACCAATAACCTCCCAAAAAG
AGTCACCTCCTCCCCTGGTCCCCCCGCCCCCGGGAAGGCCTGCCAATTTT
TTTCCCACACTTTGACTGGGAAAACCTATACCCCGGAGGGGGGAAATTCC
CGATCCCATTGATAATGTCCAGGGCCAAATTCCCGGCCCAGGAAAGGGAT
TCCCCCCCAACCCCCGAAGGCCCCCCCCTTCCCCGGGAAACCAGCCCAAA
GAAGGCCCCCCCCCCTGGCGGAATATAAACCCCCCAAAGGACCCCCCCCC
CCCCCCTTGGCCCCCCCCCCCTCGGGGGGGGGAAACGCCCAAAATGGTTT
CTTT