DY260221

Overview
NameDY260221
Unique NameDY260221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1004
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.402e-16
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   Y++++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          

HSP 2 Score: 85.1149 bits (209), Expect = 6.960e-16
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M+I VKT T K I +E+E +DTI+ +K +I++KEGIPP   R+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.124e-16
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  281 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D H+ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          

HSP 2 Score: 78.5666 bits (192), Expect = 6.514e-14
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 2
Query:   53 MQIFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 280
            M + VKT TGK I++E++ SD + ++K  +++KEGIPP Q RLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.451e-13
Identity = 48/156 (30.77%), Postives = 80/156 (51.28%), Query Frame = 2
Query:   59 IFVKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            + V++     +T +    D++  +K  ++ K  +P     L+   K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: UCRP_MOUSE (Ubiquitin cross-reactive protein OS=Mus musculus GN=Isg15 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 5.515e-13
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   65 VKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLR-LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            VK   G    + V +S T+  +K +I  K G+P  Q RL      L+DG TL+   +   ST+ LV++     + I V+   G +   EV  + T+D +K K+  +E +  DQ  L F G+ +ED   L +Y ++ +  +   LRLRGG
Sbjct:    7 VKMLGGNDFLVSVTNSMTVSELKKQIAQKIGVPAFQQRLAHQTAVLQDGLTLSSLGLGPSSTVMLVVQNCSEPLSILVRNERGHSNIYEVFLTQTVDTLKKKVSQREQVHEDQFWLSFEGRPMEDKELLGEYGLKPQCTVIKHLRLRGG 155          
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: UCRP_HUMAN (Interferon-induced 17 kDa protein OS=Homo sapiens GN=ISG15 PE=1 SV=5)

HSP 1 Score: 70.0922 bits (170), Expect = 2.317e-11
Identity = 49/151 (32.45%), Postives = 78/151 (51.66%), Query Frame = 2
Query:   65 VKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIF--AGKQLEDGRTLADYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            VK   G    + + SS ++  +KA+I  K G+   Q RL    +G  L+D   LA   +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y ++  S + + LRLRGG
Sbjct:    7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157          
BLAST of DY260221 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.741e-11
Identity = 43/154 (27.92%), Postives = 74/154 (48.05%), Query Frame = 2
Query:   65 VKTPTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQPRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYHIQKESPLHLVLRLRGG 508
            V++     +T +   SD +  +   I+ +  +      L+   K L+  R L+ Y I KE+T+HL L++         + +      G+   L V  S ++  VK  I++   +PP +Q +   GK+LEDG+ +ADY+I+  S L L     GG
Sbjct:    8 VRSEQWPLMTFDTTMSDKVKKINEHIRSQTKVSVQDQILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
The following BLAST results are available for this feature:
BLAST of DY260221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RUB3_ARATH1.402e-1653.95NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
RUB1_YEAST3.124e-1653.95NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN1.451e-1330.77Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
UCRP_MOUSE5.515e-1332.21Ubiquitin cross-reactive protein OS=Mus musculus G... [more]
UCRP_HUMAN2.317e-1132.45Interferon-induced 17 kDa protein OS=Homo sapiens ... [more]
UBD_RAT6.741e-1127.92Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260221 ID=DY260221; Name=DY260221; organism=Citrus clementina; type=EST; length=1004bp
AACAATTGTAAAGTCTCTCCCGTTGCTCGCTAGATAAACAACCTTTGTCA
ATATGCAGATCTTCGTGAAAACCCCAACCGGCAAAACGATCACTCTCGAA
GTGGAGAGCTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAA
GGAGGGGATCCCTCCGGATCAGCCGCGTCTGATCTTCGCCGGAAAGCAAC
TCGAAGATGGCCGCACCTTGGCCGATTACAACATCCAGAAGGAGTCAACG
CTCCACCTCGTGCTCAGGCTCCGTGGCGGCATGCAGATCTTCGTCAAAAC
CCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCCGACACGATCG
ATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG
CAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGC
CGATTACCACATCCAAAAAGAATCCCCCTTGCATCTTGTCCTCAGGCTCC
GTGGTGGCATGCAGATCTTCGTCCAAACCCTAACTGGGAAGACGATCCCT
CTCGAGGTGGAGAGTTCCGATACGATTGATAATGTCCAGGCCCAAATCCC
AGACAAGGAAGGGATCCCACCAAATCACCAAAGATTGATCTTCGCCGGGA
AACCATTGGAAAACGGCCCCCCCTTGGCTGACCAATAACCTCCCAAAAAG
AGTCACCTCCTCCCCTGGTCCCCCCGCCCCCGGGAAGGCCTGCCAATTTT
TTTCCCACACTTTGACTGGGAAAACCTATACCCCGGAGGGGGGAAATTCC
CGATCCCATTGATAATGTCCAGGGCCAAATTCCCGGCCCAGGAAAGGGAT
TCCCCCCCAACCCCCGAAGGCCCCCCCCTTCCCCGGGAAACCAGCCCAAA
GAAGGCCCCCCCCCCTGGCGGAATATAAACCCCCCAAAGGACCCCCCCCC
CCCCCCTTGGCCCCCCCCCCCTCGGGGGGGGGAAACGCCCAAAATGGTTT
CTTT
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