DY260225

Overview
NameDY260225
Unique NameDY260225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_ASPCL (Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus clavatus GN=tif32 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.193e-51
Identity = 94/167 (56.29%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA + PE ++L+ VSGE+ +DR+DR +VTPW KFLWETYRTVLEIL+NN++LE +Y  TA +AFQFC +Y R TEFRRLCE++RNH+ N  KY  Q    +LS P++LQ +LDTRF+QL VA +L LWQEAF S+EDIH L+ + K+  K  ++  YY +  R  L
Sbjct:  129 LEAIETPETILLATVSGEQSRDRTDRAVVTPWLKFLWETYRTVLEILKNNARLEVMYQTTALQAFQFCLKYTRKTEFRRLCELLRNHVQNAAKYSAQMHAINLSDPDTLQRHLDTRFQQLNVAVELELWQEAFRSIEDIHTLLSLSKRPAKNVMMANYYEKLARIFL 295          

HSP 2 Score: 27.7202 bits (60), Expect = 2.193e-51
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLF 568
            KL  IF +S ++L+HA AW + +
Sbjct:  289 KLARIFLVSENYLFHAAAWNRYY 311          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_MAGGR (Eukaryotic translation initiation factor 3 subunit A OS=Magnaporthe grisea GN=TIF32 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.330e-51
Identity = 92/167 (55.09%), Postives = 123/167 (73.65%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA + PE ++L+ VSGE+ +DR+DR +VTPW KFLWE YRTVL+ILRNN++LE LY  TA +AF+FC +Y R TEFRRLCE++RNH+    KY  Q    +L+ P++LQ +L+TRF+QL VA +L LWQEAF SVEDIH L+ + K+ PK  ++  YY +  R  L
Sbjct:  128 LEATETPESILLATVSGEQSRDRTDRAIVTPWLKFLWEAYRTVLDILRNNARLELLYQSTAMQAFEFCLKYIRKTEFRRLCELLRNHVQTAAKYSTQMHAINLNDPDTLQRHLETRFQQLNVAVELELWQEAFRSVEDIHTLLNLSKRPPKNIMMANYYEKLTRIFL 294          

HSP 2 Score: 28.8758 bits (63), Expect = 6.330e-51
Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFT 571
            KLT IF +  ++L+HA AW + ++
Sbjct:  288 KLTRIFLVGENYLFHAAAWSRYYS 311          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CHAGB (Eukaryotic translation initiation factor 3 subunit A OS=Chaetomium globosum GN=TIF32 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.827e-50
Identity = 92/167 (55.09%), Postives = 121/167 (72.46%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA + PE ++L+ VSGE+ KDR+DR +VTPW KFLWE YRTVL+ILRNN++LE LY  TA +AF FC +Y R TEFRRLCE++RNH+    KY  Q    +L+ P++LQ +L+TRF+QL VA +L LWQEAF SVEDIH L+ + K+  K  ++  YY +  R  L
Sbjct:  129 LEASETPESILLATVSGEQSKDRTDRAIVTPWLKFLWEAYRTVLDILRNNARLELLYQSTAMQAFDFCLKYARKTEFRRLCELLRNHVQTAAKYSAQMHAINLNDPDTLQRHLETRFQQLNVAVELELWQEAFRSVEDIHTLLSLSKRPAKNIMMANYYEKLTRIFL 295          

HSP 2 Score: 28.4906 bits (62), Expect = 1.827e-50
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLF 568
            KLT IF +  ++L+HA AW + +
Sbjct:  289 KLTRIFLVGENYLFHAAAWSRYY 311          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_NEUCR (Eukaryotic translation initiation factor 3 subunit A OS=Neurospora crassa GN=tif-32 PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.106e-50
Identity = 91/167 (54.49%), Postives = 121/167 (72.46%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA + PE ++L+ VSGE+ +DR+DR +VTPW KFLWE YRTVL+ILRNN++LE LY  TA +AF FC +Y R TEFRRLCE++RNH+    KY  Q    +L+ P++LQ +L+TRF+QL VA +L LWQEAF SVEDIH L+ + K+  K  ++  YY +  R  L
Sbjct:   75 LEASETPESILLATVSGEQSRDRTDRAIVTPWLKFLWEAYRTVLDILRNNARLEVLYQSTAMQAFDFCLKYTRKTEFRRLCELLRNHVQTAAKYSAQMHAINLNDPDTLQRHLETRFQQLNVAVELELWQEAFRSVEDIHTLLSLSKRPAKNVMMANYYEKLTRIFL 241          

HSP 2 Score: 28.4906 bits (62), Expect = 3.106e-50
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLF 568
            KLT IF +  ++L+HA AW + +
Sbjct:  235 KLTRIFLVGENYLFHAAAWARYY 257          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_USTMA (Eukaryotic translation initiation factor 3 subunit A OS=Ustilago maydis GN=TIF32 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.985e-49
Identity = 89/169 (52.66%), Postives = 119/169 (70.41%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANR 510
            +DV  LE  + PE ++L  VS ++ KDR+DR LVTPW KFLWE YRT L+ILRNN++LE  Y   A++A +FC QY+R TEFRRLCE++R HL N+ +Y       +L+  ++LQ +LDTRF QL  A +L LWQEAF SVEDIH L+ M KK P+P+++  YY +  R
Sbjct:  115 IDVDDLEESETPESMLLGSVSADQNKDRTDRVLVTPWLKFLWEAYRTALDILRNNARLEVPYQQIANQALKFCLQYQRKTEFRRLCEVLRQHLQNVARYSHHAHAINLTDQDTLQRHLDTRFAQLNSAVELELWQEAFRSVEDIHNLLTMAKKAPRPAMMANYYEKLAR 283          

HSP 2 Score: 28.4906 bits (62), Expect = 1.985e-49
Identity = 11/32 (34.38%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKN 595
            KL  IF +S ++L+HA AW + +   ++  K+
Sbjct:  280 KLARIFMVSDNNLFHAAAWNRYYALARSIAKS 311          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_ASPNC (Eukaryotic translation initiation factor 3 subunit A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif32 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.331e-49
Identity = 94/167 (56.29%), Postives = 124/167 (74.25%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA + PE ++L+ VSGE+ +DR+DR +VTPW KFLWETYRTVLEIL+NN++LE +Y  TA +AFQFC +Y R TEFRRLCE++RNH+ N  KY  Q    +LS P++LQ +LDTRF+QL VA +L LWQEAF S+EDIH L+ + K+  K  ++  YY +  R  L
Sbjct:  129 LEAIETPETILLATVSGEQSRDRTDRAVVTPWLKFLWETYRTVLEILKNNARLEVMYQTTALQAFQFCLKYTRKTEFRRLCELLRNHVQNAAKYSAQMHAINLSDPDTLQRHLDTRFQQLNVAVELELWQEAFRSIEDIHTLLSLSKRPAKNVMMANYYEKLARIFL 295          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_XENLA (Eukaryotic translation initiation factor 3 subunit A OS=Xenopus laevis GN=eif3a PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.940e-46
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNSK+E LY   A +AF+FC  Y R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSKVERLYHDIAQQAFKFCLLYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFALSKKPPKPQLMANYY 276          

HSP 2 Score: 35.039 bits (79), Expect = 1.940e-46
Identity = 14/39 (35.90%), Postives = 25/39 (64.10%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+HA    +L+   +   KNLSP+++Q
Sbjct:  278 KVSTVFWKSGNALFHASTLHRLYHLSREMRKNLSPEEMQ 316          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_YARLI (Eukaryotic translation initiation factor 3 subunit A OS=Yarrowia lipolytica GN=TIF32 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.537e-46
Identity = 90/172 (52.33%), Postives = 114/172 (66.28%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNL-----NKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANRDIL 519
            LEA++ PEDL+L+ VS E  KDR+DR +VTPW KFLWE YR+VL++LRNNSKLE +Y     +AF FC ++ R TEFRRLCE++R+HL        N         DLS  ++LQ YLDTRF QL VA  L LWQEAF SVED+H L+ + K+  KP ++  YY    R  L
Sbjct:  122 LEAEETPEDLLLATVSSEDTKDRTDRRVVTPWLKFLWEAYRSVLDVLRNNSKLEVIYQQVVEQAFNFCLKFSRKTEFRRLCELLRSHLQTTAQKGPNAPPVTATSVDLSDADTLQRYLDTRFSQLNVAVKLELWQEAFRSVEDVHTLLTVSKRPAKPLMMGNYYENLARIFL 293          

HSP 2 Score: 28.8758 bits (63), Expect = 2.537e-46
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L  IF ++ ++L+HA AW KLF
Sbjct:  288 LARIFLVAGNYLFHAAAWNKLF 309          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_SCHPO (Eukaryotic translation initiation factor 3 subunit A OS=Schizosaccharomyces pombe GN=tif32 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.197e-45
Identity = 86/159 (54.09%), Postives = 116/159 (72.96%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LEA + PE +M+S VSG+  K R+DR LVTPW KFLW+ YRTVL+ILRNN++LE +Y + A+ AFQFC +Y+R TEFRRLCE++R+HL N +K+ +     +L+  E++Q +LD RF QL VA +L LWQEAF S+EDIH L+   K+ P   +L  YY
Sbjct:  120 LEATETPESIMMSLVSGDLSKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANSAFQFCLKYQRKTEFRRLCELLRSHLGNASKFSNAPHSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDIHSLLTFSKRAPAAVMLGNYY 278          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_MOUSE (Eukaryotic translation initiation factor 3 subunit A OS=Mus musculus GN=Eif3a PE=1 SV=4)

HSP 1 Score: 173.711 bits (439), Expect = 1.615e-45
Identity = 83/164 (50.61%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNS++E LY   A +AF+FC QY R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQAFKFCLQYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFSLSKKPPKPQLMANYY 276          

HSP 2 Score: 30.8018 bits (68), Expect = 1.615e-45
Identity = 12/39 (30.77%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+HA    +L+   +   KNL+ +++Q
Sbjct:  278 KVSTVFWKSGNALFHASTLHRLYHLSREMRKNLTQEEMQ 316          
The following BLAST results are available for this feature:
BLAST of DY260225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3A_ASPCL2.193e-5156.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MAGGR6.330e-5155.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CHAGB1.827e-5055.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_NEUCR3.106e-5054.49Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_USTMA1.985e-4952.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_ASPNC2.331e-4956.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_XENLA1.940e-4650.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_YARLI2.537e-4652.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_SCHPO1.197e-4554.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MOUSE1.615e-4550.61Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260225 ID=DY260225; Name=DY260225; organism=Citrus clementina; type=EST; length=1065bp
GCTCTTGATGTCCTTTACCTTGAAGCAGATAAAAGGCCAGAAGATCTAAT
GCTTAGTTATGTAAGTGGGGAGAAGGGAAAGGATAGGTCTGATCGTGAAC
TTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACTTATAGAACAGTGCTT
GAAATATTGCGGAACAACTCAAAGTTGGAGGCACTATATGCGATGACTGC
ACACCGTGCCTTCCAATTCTGCAAGCAATACAAGCGCACAACTGAATTTC
GCAGGCTTTGTGAAATTATCCGGAACCATTTGTTGAACCTTAACAAGTAC
AGAGATCAAAGGGATCGTCCTGACCTTTCTTCCCCTGAGAGTTTGCAACT
CTATCTGGACACCAGATTTGAGCAGCTGAAGGTTGCTACTGACCTTCCGC
TCTGGCAGGAAGCGTTTTATTCTGTTGAAGATATACATGGTTTGATGTGC
ATGGTTAAGAAAACTCCCAAGCCGTCACTGCTAGTTGTTTATTATGCCGA
AGCTAACAGAGATATTCTGGATATCATCAAGCCATCTTTATCATGCTTAT
GCATGGTTCAAGCTTTTTACGCCCCCGAAAACCTACAATAAGAATTTAAG
CCCAAAAGATTTGCAGCTAATAGCACCATCTGTTGTTTTGGCTGCACTTC
TAGTGGTTCCTTATGACCCCCCGTCGCCGTGCATCTCCTTTGGAGCCTGA
AAACGAGAACGACCGGAACCTGAGGATGGCCAACCTTACACAATTCGACC
TCGCCCCCAAATTTGACACTACACAAGCGCTTTCCAAATCCCTCCCCTCC
CCCAAAATCGCGCCCCCACGGGGCACACCTCTGCCCCAACCCGCACCCGC
AACAACTTTACCCTCCCTTCCCCCACCACTTCCCTCCCCCCACCCTGCGC
CCCACGCCCCCCCCCCCTGCCCCCCCCCCCCCCACCACCCGCGCCCCCCC
ACCCCCTCCCCACCCCCTCCCACTCCAAAACCCCCAACCCTCCCTATCAC
TCCCCCCCCCCCTTCCACCCTCCCCGCCACCTTACCCACGTCCCTCACCA
CACTCTCCCCACCGC
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