DY260225

Overview
NameDY260225
Unique NameDY260225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DANRE (Eukaryotic translation initiation factor 3 subunit A OS=Danio rerio GN=eif3a PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.105e-45
Identity = 84/164 (51.22%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNSK+E LY   A +AF+FC QY R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSKVERLYHDIAQQAFKFCLQYTRKAEFRKLCDNLRMHLGQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFALSKKPPKPQLMANYY 276          

HSP 2 Score: 29.6462 bits (65), Expect = 2.105e-45
Identity = 11/39 (28.21%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+H+    +L+   +   KNL+ +++Q
Sbjct:  278 KVSTVFWKSGNALFHSCTLHRLYHLSREMRKNLTQEEMQ 316          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_HUMAN (Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.742e-45
Identity = 83/164 (50.61%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNS++E LY   A +AF+FC QY R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQAFKFCLQYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFSLSKKPPKPQLMANYY 276          

HSP 2 Score: 30.0314 bits (66), Expect = 2.742e-45
Identity = 12/39 (30.77%), Postives = 23/39 (58.97%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+HA    +L+   +   KNL+  ++Q
Sbjct:  278 KVSTVFWKSGNALFHASTLHRLYHLSREMRKNLTQDEMQ 316          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_RAT (Eukaryotic translation initiation factor 3 subunit A OS=Rattus norvegicus GN=Eif3a PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.742e-45
Identity = 83/164 (50.61%), Postives = 115/164 (70.12%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNS++E LY   A +AF+FC QY R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSRVERLYHDIAQQAFKFCLQYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFSLSKKPPKPQLMANYY 276          

HSP 2 Score: 30.0314 bits (66), Expect = 2.742e-45
Identity = 12/39 (30.77%), Postives = 23/39 (58.97%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+HA    +L+   +   KNL+  ++Q
Sbjct:  278 KVSTVFWKSGNALFHASTLHRLYHLSREMRKNLTQDEMQ 316          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_XENTR (Eukaryotic translation initiation factor 3 subunit A OS=Xenopus tropicalis GN=eif3a PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.573e-45
Identity = 83/164 (50.61%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+  + PE ++LS VSGE  +DR+DR L+TPW KFLWE+YR  L++LRNNSK+E LY   A +AF+FC  Y R  EFR+LC+ +R HL  + ++ +Q    +L++PES  ++L+TR  QL  A  + LWQEAF +VEDIHGL  + KK PKP L+  YY
Sbjct:  113 LDIEDLDNIQTPESVLLSAVSGEDTQDRTDRLLLTPWVKFLWESYRQCLDLLRNNSKVERLYHDIAQQAFKFCLLYTRKAEFRKLCDNLRMHLSQIQRHHNQSTAINLNNPESQSMHLETRLVQLDSAISMELWQEAFKAVEDIHGLFALSKKPPKPQLMANYY 276          

HSP 2 Score: 30.8018 bits (68), Expect = 3.573e-45
Identity = 12/39 (30.77%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            K++ +FW S + L+HA    +L+   +   KNL+ +++Q
Sbjct:  278 KVSTVFWKSGNTLFHASTLHRLYHLSREMRKNLTQEEMQ 316          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_NEMVE (Eukaryotic translation initiation factor 3 subunit A OS=Nematostella vectensis GN=v1g190699 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 1.121e-43
Identity = 83/164 (50.61%), Postives = 120/164 (73.17%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            +D+  L+  + PE L+LS+VSGE  +DR+DR  +TPW KFLWE YR VLE+LRNN ++E LY  TA +AF+FC +Y R TEFR+LC+ +RNHL    K++ Q +  +L++P+S+Q++L+TR  QL  A  + LWQEAF +VED++GLM + K+ PKP ++  YY
Sbjct:  121 VDIEDLDQIQTPESLLLSFVSGEDTQDRTDRVKLTPWVKFLWEAYRNVLELLRNNVRVEKLYHETAQQAFKFCLKYTRRTEFRKLCDNLRNHLNVTLKHQGQPNSVNLNNPDSIQMHLETRLAQLDSAISMELWQEAFKAVEDVYGLMQLSKRPPKPQVMANYY 284          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CANAL (Eukaryotic translation initiation factor 3 subunit A OS=Candida albicans GN=TIF32 PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.150e-43
Identity = 80/168 (47.62%), Postives = 110/168 (65.48%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQR----DRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANR 510
            LE  + PE ++LS VS     DR++RELVTPW +FLWE +R VL+ILRNNSKLE  Y+   ++AF+FC  + R  EFRRLCE++R H+ ++      +    +  DLS  E++Q YLD RF QL +A  L LWQE+F SV+D+H L+   KK PKP+++  YY    R
Sbjct:  155 LETAQTPESILLSAVSNTDSADRTERELVTPWLRFLWEAFRAVLDILRNNSKLEITYSAIVNQAFKFCLNFNRKAEFRRLCELLRTHMQSVTTQTTTKTSGHNAIDLSDAETVQRYLDQRFAQLNIAVKLELWQESFRSVDDVHSLITASKKAPKPNMMANYYENLAR 322          

HSP 2 Score: 28.1054 bits (61), Expect = 7.150e-43
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L  IF +S + LYHA AW K F
Sbjct:  320 LARIFAVSDNTLYHAAAWNKFF 341          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DEBHA (Eukaryotic translation initiation factor 3 subunit A OS=Debaryomyces hansenii GN=TIF32 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.501e-42
Identity = 80/167 (47.90%), Postives = 109/167 (65.27%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLN---KYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANR 510
            LEA + PE ++LS VS     DR++RELV PW +FLWE  R VL+ILRNNSKLE  Y+   ++AFQFC ++ R  EFRRLCE++R H+ ++    K     +  DLS  E++Q YLD RF QL ++  L LWQE+F SV+D+H L+   KK P+P ++  YY    R
Sbjct:  127 LEAAQTPESILLSAVSNADSADRTERELVNPWLRFLWEALRAVLDILRNNSKLEVTYSAIVNQAFQFCLKFNRKAEFRRLCELLRGHMQSVTTQIKPTGSMNAIDLSDSETVQRYLDQRFAQLNISVKLELWQESFRSVDDVHTLITASKKAPRPVMMANYYENLGR 293          

HSP 2 Score: 27.7202 bits (60), Expect = 3.501e-42
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L  IF +S + LYHA AW K F
Sbjct:  291 LGRIFAVSGNSLYHAAAWNKFF 312          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CULQU (Eukaryotic translation initiation factor 3 subunit A OS=Culex quinquefasciatus GN=eIF3-S10 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.550e-42
Identity = 78/164 (47.56%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+    PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+L+ NS  E LY   A  AF FC +Y R  EFR+LCE +R HL +++K   Q     +S PE+ QL LDTR  QL  A  + LW EA+ ++EDIHGLM + KKTP P  + +YY
Sbjct:  115 LDIDDLDNLATPESILMSAVCGEDAQDRSDRTILLPWVKFLWESYGQCLELLKVNSHCENLYHDIAKMAFAFCLKYNRKMEFRKLCEKLRKHLDDISKVSSQTANVSISKPETQQLNLDTRLNQLDCAIQMELWLEAYKAIEDIHGLMTLSKKTPMPKTMALYY 278          

HSP 2 Score: 34.2686 bits (77), Expect = 4.550e-42
Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +FW + + L+HA A  KLF   +   KN++ +++Q
Sbjct:  280 KLAMVFWKAGNQLFHAAALLKLFQLSRDMKKNVTQEEIQ 318          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_PICGU (Eukaryotic translation initiation factor 3 subunit A OS=Pichia guilliermondii GN=TIF32 PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.562e-42
Identity = 80/167 (47.90%), Postives = 109/167 (65.27%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLN---KYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANR 510
            LE  + PE +++S VS     DR++RELVTPW +FLWE +R VL+ILRNNSK E  Y+   ++AFQFC ++ R  EFRRLCE++R H+  +    K     +  DLS  E++Q YLD RF QL ++  L LWQE+F SV+D+H L+   KKTPKP ++  YY    R
Sbjct:  127 LETSQTPESILMSAVSNTDTADRTERELVTPWLRFLWEAFRAVLDILRNNSKTEVTYSTIVNQAFQFCFRFNRKAEFRRLCELLRAHIQTVTTQPKTAGTTNAIDLSDSETIQRYLDQRFSQLNISVKLELWQESFRSVDDVHTLITASKKTPKPVMMANYYENLAR 293          

HSP 2 Score: 26.5646 bits (57), Expect = 4.562e-42
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L  IF +S + L+HA AW K F
Sbjct:  291 LARIFAVSDNGLFHAAAWNKFF 312          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_AEDAE (Eukaryotic translation initiation factor 3 subunit A OS=Aedes aegypti GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.930e-42
Identity = 78/164 (47.56%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LD+  L+    PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+L+ NS  E LY   A  AF FC +Y R  EFR+LCE +R HL +++K   Q     +S PE+ QL LDTR  QL  A  + LW EA+ ++EDIHGLM + KKTP P  + +YY
Sbjct:  115 LDIDDLDNLATPESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLKVNSHCENLYHDIAKMAFGFCLKYNRKMEFRKLCEKLRKHLEDISKVSSQTANVSISKPETQQLNLDTRLNQLDCAIQMELWLEAYKAIEDIHGLMTLSKKTPMPKTMALYY 278          

HSP 2 Score: 34.2686 bits (77), Expect = 5.930e-42
Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +FW + + L+HA A  KLF   +   KN++ +++Q
Sbjct:  280 KLAMVFWKAGNQLFHAAALLKLFQLSRDMKKNVTQEEIQ 318          
The following BLAST results are available for this feature:
BLAST of DY260225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3A_DANRE2.105e-4551.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_HUMAN2.742e-4550.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_RAT2.742e-4550.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_XENTR3.573e-4550.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_NEMVE1.121e-4350.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CANAL7.150e-4347.62Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DEBHA3.501e-4247.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CULQU4.550e-4247.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_PICGU4.562e-4247.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_AEDAE5.930e-4247.56Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260225 ID=DY260225; Name=DY260225; organism=Citrus clementina; type=EST; length=1065bp
GCTCTTGATGTCCTTTACCTTGAAGCAGATAAAAGGCCAGAAGATCTAAT
GCTTAGTTATGTAAGTGGGGAGAAGGGAAAGGATAGGTCTGATCGTGAAC
TTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACTTATAGAACAGTGCTT
GAAATATTGCGGAACAACTCAAAGTTGGAGGCACTATATGCGATGACTGC
ACACCGTGCCTTCCAATTCTGCAAGCAATACAAGCGCACAACTGAATTTC
GCAGGCTTTGTGAAATTATCCGGAACCATTTGTTGAACCTTAACAAGTAC
AGAGATCAAAGGGATCGTCCTGACCTTTCTTCCCCTGAGAGTTTGCAACT
CTATCTGGACACCAGATTTGAGCAGCTGAAGGTTGCTACTGACCTTCCGC
TCTGGCAGGAAGCGTTTTATTCTGTTGAAGATATACATGGTTTGATGTGC
ATGGTTAAGAAAACTCCCAAGCCGTCACTGCTAGTTGTTTATTATGCCGA
AGCTAACAGAGATATTCTGGATATCATCAAGCCATCTTTATCATGCTTAT
GCATGGTTCAAGCTTTTTACGCCCCCGAAAACCTACAATAAGAATTTAAG
CCCAAAAGATTTGCAGCTAATAGCACCATCTGTTGTTTTGGCTGCACTTC
TAGTGGTTCCTTATGACCCCCCGTCGCCGTGCATCTCCTTTGGAGCCTGA
AAACGAGAACGACCGGAACCTGAGGATGGCCAACCTTACACAATTCGACC
TCGCCCCCAAATTTGACACTACACAAGCGCTTTCCAAATCCCTCCCCTCC
CCCAAAATCGCGCCCCCACGGGGCACACCTCTGCCCCAACCCGCACCCGC
AACAACTTTACCCTCCCTTCCCCCACCACTTCCCTCCCCCCACCCTGCGC
CCCACGCCCCCCCCCCCTGCCCCCCCCCCCCCCACCACCCGCGCCCCCCC
ACCCCCTCCCCACCCCCTCCCACTCCAAAACCCCCAACCCTCCCTATCAC
TCCCCCCCCCCCTTCCACCCTCCCCGCCACCTTACCCACGTCCCTCACCA
CACTCTCCCCACCGC
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