DY260225

Overview
NameDY260225
Unique NameDY260225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROGR (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila grimshawi GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.713e-41
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++ PE+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM M KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSNNQTTGVSITKPETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMAMSKKTPVPKTMANYY 280

HSP 2 Score: 32.3426 bits (72), Expect = 1.713e-41
Identity = 16/39 (41.03%), Postives = 23/39 (58.97%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+ +DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKEDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_ANOGA (Eukaryotic translation initiation factor 3 subunit A OS=Anopheles gambiae GN=eIF3-S10 PE=3 SV=4)

HSP 1 Score: 156.377 bits (394), Expect = 2.227e-41
Identity = 77/166 (46.39%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:    4 LDVLYLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAE 501
            +D+  L+    PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+L+ NS  E LY   A  AFQFC +Y R  EFR+LCE +R HL ++ K   Q     +S PE+ QL L+TR  QL  A  + LW EA+ ++EDIHGLM + KKTP P  + +YY +
Sbjct:  115 VDIDDLDNLATPESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLKVNSHCETLYHDIARMAFQFCLKYNRKMEFRKLCEKLRKHLEDICKVSSQTANVTISKPETQQLNLETRLHQLDSAIQMELWLEAYKAIEDIHGLMQLSKKTPLPKTMALYYTK 280

HSP 2 Score: 34.2686 bits (77), Expect = 2.227e-41
Identity = 14/39 (35.90%), Postives = 24/39 (61.54%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +FW + + L+HA A  KLF   +   KN++ +++Q
Sbjct:  280 KLAMVFWKAGNQLFHASALLKLFQLSRDMKKNVTAEEIQ 318
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_LODEL (Eukaryotic translation initiation factor 3 subunit A OS=Lodderomyces elongisporus GN=TIF32 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.790e-41
Identity = 79/166 (47.59%), Postives = 109/166 (65.66%), Query Frame = 1 
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKY--RDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYYAEANR 510
            LE  + PE ++LS VS     DR++RELVTPW +FLWE +R  L+ILRNNSKLE  Y+   ++AF+FC  +KR  EFRRLCE++R H+ ++         +  DLS  E++Q YL+ RF QL +A  L LWQE+F SV+D+H L+   KK PKP+++  YY    R
Sbjct:  129 LETAQTPETILLSAVSNTDTADRTERELVTPWLRFLWEAFRATLDILRNNSKLEVTYSAIVNQAFKFCLNFKRKAEFRRLCELLRVHMQSVTTQTKTSSNNAIDLSDFETVQRYLEQRFAQLNIAVKLELWQESFRSVDDVHTLITASKKAPKPTMMANYYENLAR 294

HSP 2 Score: 26.5646 bits (57), Expect = 3.790e-41
Identity = 11/22 (50.00%), Postives = 14/22 (63.64%), Query Frame = 2 
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L  IF +S + L+HA AW K F
Sbjct:  292 LARIFAVSDNALFHAAAWNKFF 313
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROVI (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila virilis GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-40
Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM M KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMAMSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 4.090e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROMO (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila mojavensis GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.091e-40
Identity = 76/153 (49.67%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM M KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMAMSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 4.091e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROPE (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila persimilis GN=eIF3-S10 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.043e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 9.043e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROPS (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.045e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 9.045e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROSI (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila simulans GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.046e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 9.046e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROSE (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila sechellia GN=eIF3-S10 PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.046e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 9.046e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
[Close]
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROME (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila melanogaster GN=eIF3-S10 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.046e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1 
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280

HSP 2 Score: 31.5722 bits (70), Expect = 9.046e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320
The following BLAST results are available for this feature:
BLAST of DY260225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3A_DROGR1.713e-4150.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_ANOGA2.227e-4146.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_LODEL3.790e-4147.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROVI4.090e-4049.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROMO4.091e-4049.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROPE9.043e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROPS9.045e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROSI9.046e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROSE9.046e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROME9.046e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260225 ID=DY260225; Name=DY260225; organism=Citrus clementina; type=EST; length=1065bp
GCTCTTGATGTCCTTTACCTTGAAGCAGATAAAAGGCCAGAAGATCTAAT
GCTTAGTTATGTAAGTGGGGAGAAGGGAAAGGATAGGTCTGATCGTGAAC
TTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACTTATAGAACAGTGCTT
GAAATATTGCGGAACAACTCAAAGTTGGAGGCACTATATGCGATGACTGC
ACACCGTGCCTTCCAATTCTGCAAGCAATACAAGCGCACAACTGAATTTC
GCAGGCTTTGTGAAATTATCCGGAACCATTTGTTGAACCTTAACAAGTAC
AGAGATCAAAGGGATCGTCCTGACCTTTCTTCCCCTGAGAGTTTGCAACT
CTATCTGGACACCAGATTTGAGCAGCTGAAGGTTGCTACTGACCTTCCGC
TCTGGCAGGAAGCGTTTTATTCTGTTGAAGATATACATGGTTTGATGTGC
ATGGTTAAGAAAACTCCCAAGCCGTCACTGCTAGTTGTTTATTATGCCGA
AGCTAACAGAGATATTCTGGATATCATCAAGCCATCTTTATCATGCTTAT
GCATGGTTCAAGCTTTTTACGCCCCCGAAAACCTACAATAAGAATTTAAG
CCCAAAAGATTTGCAGCTAATAGCACCATCTGTTGTTTTGGCTGCACTTC
TAGTGGTTCCTTATGACCCCCCGTCGCCGTGCATCTCCTTTGGAGCCTGA
AAACGAGAACGACCGGAACCTGAGGATGGCCAACCTTACACAATTCGACC
TCGCCCCCAAATTTGACACTACACAAGCGCTTTCCAAATCCCTCCCCTCC
CCCAAAATCGCGCCCCCACGGGGCACACCTCTGCCCCAACCCGCACCCGC
AACAACTTTACCCTCCCTTCCCCCACCACTTCCCTCCCCCCACCCTGCGC
CCCACGCCCCCCCCCCCTGCCCCCCCCCCCCCCACCACCCGCGCCCCCCC
ACCCCCTCCCCACCCCCTCCCACTCCAAAACCCCCAACCCTCCCTATCAC
TCCCCCCCCCCCTTCCACCCTCCCCGCCACCTTACCCACGTCCCTCACCA
CACTCTCCCCACCGC
back to top