DY260225

Overview
NameDY260225
Unique NameDY260225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROAN (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila ananassae GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.046e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280          

HSP 2 Score: 31.5722 bits (70), Expect = 9.046e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROER (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila erecta GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.046e-40
Identity = 75/153 (49.02%), Postives = 100/153 (65.36%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280          

HSP 2 Score: 31.5722 bits (70), Expect = 9.046e-40
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROWI (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila willistoni GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.606e-39
Identity = 74/153 (48.37%), Postives = 99/153 (64.71%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  E LY   A  AFQFC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCETLYHDIARMAFQFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYKAIEDIHGLMALSKKTPVPKTMANYY 280          

HSP 2 Score: 31.5722 bits (70), Expect = 2.606e-39
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DROYA (Eukaryotic translation initiation factor 3 subunit A OS=Drosophila yakuba GN=eIF3-S10 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.396e-39
Identity = 74/153 (48.37%), Postives = 99/153 (64.71%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            PE +++S V GE  +DRSDR ++ PW KFLWE+Y   LE+LR N+  EALY   A  AF FC +Y R +EFRRLC+ +R HL ++ K  +Q     ++  E+ QL LDTR   L  A  + LWQEA+ ++EDIHGLM + KKTP P  +  YY
Sbjct:  128 PESILMSAVCGEDAQDRSDRTILLPWVKFLWESYCQCLELLRVNTHCEALYHDIARMAFHFCLKYNRKSEFRRLCDKLRKHLEDICKSSNQTTGVSINKVETQQLCLDTRLYLLDSAIQMELWQEAYRAIEDIHGLMALSKKTPVPKTMANYY 280          

HSP 2 Score: 31.5722 bits (70), Expect = 3.396e-39
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +F  + + L+HA A  KLF   +   KNL+  DLQ
Sbjct:  282 KLAMVFSKAGNQLFHAAALLKLFQLTRELKKNLTKDDLQ 320          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CAEBR (Eukaryotic translation initiation factor 3 subunit A OS=Caenorhabditis briggsae GN=egl-45 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.378e-37
Identity = 75/161 (46.58%), Postives = 106/161 (65.84%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRD----RPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMV----KKTPKPSLLVVYY 495
            PE L+L+ VSG   +DR DR ++ PW +FLW++YR  LE+LRNN+++E LY   +  +F FC +Y+R TEFR+LC+++R HL  + K++   +    R  L+SPESL L  DTR  QL  A  + LWQEA+ S ED+HG+M +     K+T KPS  V YY
Sbjct:  125 PERLLLAVVSGAAAQDRMDRTVLAPWLRFLWDSYRNCLELLRNNAQVEQLYHTISRHSFSFCLRYQRRTEFRKLCDLLRMHLNQIQKHQYAPNVNSFRVKLTSPESLTLMQDTRLVQLDTAIQMELWQEAYKSAEDVHGMMQLSKDKDKRTVKPSSYVNYY 285          

HSP 2 Score: 26.9498 bits (58), Expect = 1.378e-37
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +FW + + L+HA A  + F   K   K+ + ++ Q
Sbjct:  287 KLALVFWKAGNRLFHAAALLQKFIIYKDMKKSFTQEEAQ 325          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CAEEL (Eukaryotic translation initiation factor 3 subunit A OS=Caenorhabditis elegans GN=egl-45 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.488e-36
Identity = 74/161 (45.96%), Postives = 106/161 (65.84%), Query Frame = 1
Query:   37 PEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRD----RPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMV----KKTPKPSLLVVYY 495
            PE L+L+ VSG   +DR DR ++ PW +FLW++YR  LE+LRNN+++E LY   +  +F FC +Y+R TEFR+LC+++R HL  + K++   +    R  L+SPESL L  DTR  QL  A  + LWQEA+ S ED+HG+M +     K+T KP+  V YY
Sbjct:  125 PERLLLAVVSGAAAQDRMDRTVLAPWLRFLWDSYRNCLELLRNNAQVEQLYHTISRHSFTFCLRYQRRTEFRKLCDLLRMHLNQIQKHQYAPNVNSFRVKLTSPESLGLMQDTRLIQLDTAIQMELWQEAYKSAEDVHGMMQLSKDKDKRTVKPASYVNYY 285          

HSP 2 Score: 25.7942 bits (55), Expect = 1.488e-36
Identity = 12/39 (30.77%), Postives = 20/39 (51.28%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL  +FW + + L+HA A  + F   K   K+ +  + Q
Sbjct:  287 KLALVFWKAGNSLFHAAALLQKFIIYKDMKKSFTQDEAQ 325          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_BRUMA (Eukaryotic translation initiation factor 3 subunit A OS=Brugia malayi GN=Bm1_29045 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.467e-36
Identity = 72/163 (44.17%), Postives = 106/163 (65.03%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVK----KTPKPSLLVVYY 495
            L+    PE+L+LS VSG+  +DR DR +++PW +FLW++YR  L++LRN + +E LY   A ++F+FC +Y+R TEFR+LC+ +R HL  + K++       L+S ESL L  DTR  QL  A  + LWQEA+ S ED+HG+M + K    +  KP+  V YY
Sbjct:  119 LDQADAPENLLLSAVSGDAAQDRMDRTVLSPWLRFLWDSYRNCLDLLRNTAVVEQLYHRIARQSFEFCAKYQRRTEFRKLCDNLRLHLTQIQKHQHLAHVVKLTSAESLTLMQDTRLIQLDTAIQMELWQEAYRSAEDVHGMMQLSKDKDERMVKPASYVNYY 281          

HSP 2 Score: 24.6386 bits (52), Expect = 9.467e-36
Identity = 11/37 (29.73%), Postives = 19/37 (51.35%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKD 610
            KL  +FW + + L+HA A  + +   K   K  S ++
Sbjct:  283 KLALVFWKAGNRLFHAAALLQKYIIYKDMKKTFSMEE 319          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_ASHGO (Eukaryotic translation initiation factor 3 subunit A OS=Ashbya gossypii GN=TIF32 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.242e-34
Identity = 72/161 (44.72%), Postives = 103/161 (63.98%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHL--LNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE    PE+L++S    ++     + E VT W +F WE+YRTVL++LRNNS+LE  Y+   +RA QFC +Y R  EF+RL +++R HL   N  + + ++   DLS P++LQ YLD R  Q+ V+  L LW EAF S+ED+H L+ M  + PKPS+L  YY
Sbjct:  121 LEGGVTPENLLISVYEQDQSVGGFNDEAVTSWLRFTWESYRTVLDLLRNNSQLEITYSGVVNRAMQFCLKYNRKNEFKRLADMLRQHLDAANYQQQKSKQYTVDLSDPDTLQRYLDQRILQVNVSVKLGLWHEAFRSIEDVHHLLSMSTRDPKPSVLANYY 281          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_KLULA (Eukaryotic translation initiation factor 3 subunit A OS=Kluyveromyces lactis GN=TIF32 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.767e-34
Identity = 73/161 (45.34%), Postives = 100/161 (62.11%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHL--LNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE    PE+L++S    E+     + + V+ W +F WE+YRT L+ LRNNS+LE  YA   +R  QFC +Y R  EF+RL E++R HL   N  + R      DLS P++LQ Y D RF+Q+ V+  L LW EAF S+ED+H LM + K+ PKPS+L  YY
Sbjct:  126 LEGGVTPENLLVSVYEQEQTVGGFNNDDVSAWLRFTWESYRTTLDFLRNNSQLEITYAGVVNRTMQFCYKYNRKNEFKRLAEMLRQHLDAANYQQQRYGHHTVDLSDPDTLQRYSDQRFQQVNVSVKLELWHEAFRSIEDVHHLMRLSKRAPKPSVLANYY 286          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_MONBE (Eukaryotic translation initiation factor 3 subunit A OS=Monosiga brevicollis GN=33388 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 3.831e-34
Identity = 66/165 (40.00%), Postives = 104/165 (63.03%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRP------DLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE  + PE ++L+ VS +   +R++R  + PW ++LWE YR VLE+LR++SK+E  Y  TA +A +FC QY+R  EFRRLC ++    L+LN++R            D+++P+++Q  LDTRFE +  A  L  WQEAF ++E++ GL+    + P P +  +YY
Sbjct:  125 LEEAQTPEQVLLAAVSADGETERANRVQLMPWLRYLWEAYRAVLELLRHHSKMEHAYHATARQAMRFCHQYERRNEFRRLCNMLS---LHLNQWRTPYQSKSGQAGIDINNPQTIQYSLDTRFELISYAGKLEQWQEAFRAMEEVTGLLDSAPEKPSPPVWGIYY 286          

HSP 2 Score: 33.4982 bits (75), Expect = 3.831e-34
Identity = 14/39 (35.90%), Postives = 22/39 (56.41%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL +IFW S  + +HA AW ++F       K+ +  D+Q
Sbjct:  288 KLAQIFWRSKDYAFHAAAWHQMFDNAIRNAKSFNRDDIQ 326          
The following BLAST results are available for this feature:
BLAST of DY260225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3A_DROAN9.046e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROER9.046e-4049.02Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROWI2.606e-3948.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DROYA3.396e-3948.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CAEBR1.378e-3746.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CAEEL1.488e-3645.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_BRUMA9.467e-3644.17Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_ASHGO1.242e-3444.72Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_KLULA2.767e-3445.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MONBE3.831e-3440.00Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260225 ID=DY260225; Name=DY260225; organism=Citrus clementina; type=EST; length=1065bp
GCTCTTGATGTCCTTTACCTTGAAGCAGATAAAAGGCCAGAAGATCTAAT
GCTTAGTTATGTAAGTGGGGAGAAGGGAAAGGATAGGTCTGATCGTGAAC
TTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACTTATAGAACAGTGCTT
GAAATATTGCGGAACAACTCAAAGTTGGAGGCACTATATGCGATGACTGC
ACACCGTGCCTTCCAATTCTGCAAGCAATACAAGCGCACAACTGAATTTC
GCAGGCTTTGTGAAATTATCCGGAACCATTTGTTGAACCTTAACAAGTAC
AGAGATCAAAGGGATCGTCCTGACCTTTCTTCCCCTGAGAGTTTGCAACT
CTATCTGGACACCAGATTTGAGCAGCTGAAGGTTGCTACTGACCTTCCGC
TCTGGCAGGAAGCGTTTTATTCTGTTGAAGATATACATGGTTTGATGTGC
ATGGTTAAGAAAACTCCCAAGCCGTCACTGCTAGTTGTTTATTATGCCGA
AGCTAACAGAGATATTCTGGATATCATCAAGCCATCTTTATCATGCTTAT
GCATGGTTCAAGCTTTTTACGCCCCCGAAAACCTACAATAAGAATTTAAG
CCCAAAAGATTTGCAGCTAATAGCACCATCTGTTGTTTTGGCTGCACTTC
TAGTGGTTCCTTATGACCCCCCGTCGCCGTGCATCTCCTTTGGAGCCTGA
AAACGAGAACGACCGGAACCTGAGGATGGCCAACCTTACACAATTCGACC
TCGCCCCCAAATTTGACACTACACAAGCGCTTTCCAAATCCCTCCCCTCC
CCCAAAATCGCGCCCCCACGGGGCACACCTCTGCCCCAACCCGCACCCGC
AACAACTTTACCCTCCCTTCCCCCACCACTTCCCTCCCCCCACCCTGCGC
CCCACGCCCCCCCCCCCTGCCCCCCCCCCCCCCACCACCCGCGCCCCCCC
ACCCCCTCCCCACCCCCTCCCACTCCAAAACCCCCAACCCTCCCTATCAC
TCCCCCCCCCCCTTCCACCCTCCCCGCCACCTTACCCACGTCCCTCACCA
CACTCTCCCCACCGC
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