DY260225

Overview
NameDY260225
Unique NameDY260225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_VANPO (Eukaryotic translation initiation factor 3 subunit A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF32 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.900e-33
Identity = 75/161 (46.58%), Postives = 99/161 (61.49%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHL--LNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE    PE+L+ S    ++     + E+VT W KF WE+YR VL+++RNNS+LE  YA   +R  QFC +Y R  EF+RL E++R HL   N  + +   +  DLS  E+LQ YLD RF QL V+  L LW EAF S+ED++ LM M K TPK S L  YY
Sbjct:  122 LEGGVTPENLLKSVYIQDQSVAGFNDEVVTSWLKFTWESYRAVLDLVRNNSQLEITYAGVVNRTMQFCLKYNRKNEFKRLAEMLRQHLDAANYQQSKIGSNIVDLSDSETLQRYLDQRFLQLNVSVKLELWHEAFRSIEDVYHLMKMSKHTPKSSTLANYY 282          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CRYNE (Eukaryotic translation initiation factor 3 subunit A OS=Cryptococcus neoformans GN=TIF32 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.589e-32
Identity = 73/156 (46.79%), Postives = 101/156 (64.74%), Query Frame = 1
Query:   34 RPEDLMLS-YVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCE-IIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            +P  LML  +V     ++R +R L+ P  KF W++Y   L+I ++N +LE +Y   AHRAF FCK ++R  +FRRLCE  +R  L N  KY  Q+   +LS PE+L  +LDTRF QL+ A +L LWQEAF S+ED+HGL+   K T KPS++  YY
Sbjct:  132 QPASLMLDCFVDSAGDRERIERRLIAPAQKFCWDSYDICLDIAKSNDRLEVIYQSIAHRAFHFCKIHQRKADFRRLCEQRLRKDLANAAKYSHQQHAINLSDPETLGRFLDTRFLQLETAVELELWQEAFRSIEDVHGLIAGRKGT-KPSMMANYY 286          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_YEAST (Eukaryotic translation initiation factor 3 subunit A OS=Saccharomyces cerevisiae GN=TIF32 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.739e-31
Identity = 66/161 (40.99%), Postives = 98/161 (60.87%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHL--LNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE    PE+L++S    ++     + E +T W +F WE+YR VL++LRNN+ LE  Y+    +   FC +Y+R  EF+RL E++R HL   N  + +   +  DLS  ++LQ YLD RF+Q+ V+  L LW EA+ S+ED+  LM + K+ PKPS L  YY
Sbjct:  123 LEGGVTPENLLISVYESDQSVAGFNDEAITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKKTMHFCLKYQRKNEFKRLAEMLRQHLDAANYQQSKSGNNLVDLSDADTLQRYLDQRFQQVDVSVKLELWHEAYRSIEDVFHLMKISKRAPKPSTLANYY 283          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_CANGA (Eukaryotic translation initiation factor 3 subunit A OS=Candida glabrata GN=TIF32 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.219e-29
Identity = 62/161 (38.51%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   19 LEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQ--RDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            LE    PE+L+ S    +      + E +  W +F WE+YRT L++LRNNS+LE  Y+    R  QFC +++R  EF+RL E++R HL   N ++ +   ++ DLS  ++LQ YLD RF+ +  +  L LW EA+ + ED++ LM M  + PK S L  Y+
Sbjct:  123 LEGGVTPENLLSSVYEADHSVAGFNDEALNSWMRFSWESYRTALDLLRNNSQLEITYSGVVSRTMQFCLKHQRKNEFKRLAEMLRQHLDTANYHQSKFGSNQVDLSDADTLQRYLDQRFQLVDASVKLGLWHEAYKAAEDVYHLMKMTTRKPKSSTLANYF 283          

HSP 2 Score: 24.2534 bits (51), Expect = 7.219e-29
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 2
Query:  503 LTEIFWISSSHLYHAYAWFKLF 568
            L +IF +S   + H  AW K F
Sbjct:  286 LVQIFLVSGDQILHTLAWKKYF 307          
BLAST of DY260225 vs. ExPASy Swiss-Prot
Match: EIF3A_DICDI (Eukaryotic translation initiation factor 3 subunit A OS=Dictyostelium discoideum GN=eif3a PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.273e-17
Identity = 39/143 (27.27%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  100 LVTPWFKFLWETYRTVLEILR-----------NNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLLNLNKYRDQRDRPDLSSPESLQLYLDTRFEQLKVATDLPLWQEAFYSVEDIHGLMCMVKKTPKPSLLVVYY 495
            L+  + K+L+E Y+ ++E+L            ++SK ++     + +A  +C +Y+R  +F  L E+ R+ +  L K         + S +++  +++ RF QL VA  L L+  A+ S+EDI+ ++  +   PKP +L  YY
Sbjct:  136 LLFSYMKYLFEAYKAMIEVLTRQNTKFEHTKFDHSKFDSTLLKISTQALNYCSKYQRKPDFMVLTELFRSSIEQLFK---------VPSLDTVNTHIEIRFHQLTVAISLGLYLIAYKSIEDINIMLFSLLVKPKPVVLATYY 269          

HSP 2 Score: 43.5134 bits (101), Expect = 3.273e-17
Identity = 17/39 (43.59%), Postives = 26/39 (66.67%), Query Frame = 2
Query:  500 KLTEIFWISSSHLYHAYAWFKLFTPPKTYNKNLSPKDLQ 616
            KL +++WI+++HL HAYA +K +   K YN N +  D Q
Sbjct:  271 KLAQVYWITNAHLLHAYALYKHYVYNKNYNMNFTQADSQ 309          
The following BLAST results are available for this feature:
BLAST of DY260225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3A_VANPO8.900e-3346.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CRYNE2.589e-3246.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_YEAST3.739e-3140.99Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_CANGA7.219e-2938.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_DICDI3.273e-1727.27Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260225 ID=DY260225; Name=DY260225; organism=Citrus clementina; type=EST; length=1065bp
GCTCTTGATGTCCTTTACCTTGAAGCAGATAAAAGGCCAGAAGATCTAAT
GCTTAGTTATGTAAGTGGGGAGAAGGGAAAGGATAGGTCTGATCGTGAAC
TTGTTACCCCTTGGTTCAAGTTTTTGTGGGAGACTTATAGAACAGTGCTT
GAAATATTGCGGAACAACTCAAAGTTGGAGGCACTATATGCGATGACTGC
ACACCGTGCCTTCCAATTCTGCAAGCAATACAAGCGCACAACTGAATTTC
GCAGGCTTTGTGAAATTATCCGGAACCATTTGTTGAACCTTAACAAGTAC
AGAGATCAAAGGGATCGTCCTGACCTTTCTTCCCCTGAGAGTTTGCAACT
CTATCTGGACACCAGATTTGAGCAGCTGAAGGTTGCTACTGACCTTCCGC
TCTGGCAGGAAGCGTTTTATTCTGTTGAAGATATACATGGTTTGATGTGC
ATGGTTAAGAAAACTCCCAAGCCGTCACTGCTAGTTGTTTATTATGCCGA
AGCTAACAGAGATATTCTGGATATCATCAAGCCATCTTTATCATGCTTAT
GCATGGTTCAAGCTTTTTACGCCCCCGAAAACCTACAATAAGAATTTAAG
CCCAAAAGATTTGCAGCTAATAGCACCATCTGTTGTTTTGGCTGCACTTC
TAGTGGTTCCTTATGACCCCCCGTCGCCGTGCATCTCCTTTGGAGCCTGA
AAACGAGAACGACCGGAACCTGAGGATGGCCAACCTTACACAATTCGACC
TCGCCCCCAAATTTGACACTACACAAGCGCTTTCCAAATCCCTCCCCTCC
CCCAAAATCGCGCCCCCACGGGGCACACCTCTGCCCCAACCCGCACCCGC
AACAACTTTACCCTCCCTTCCCCCACCACTTCCCTCCCCCCACCCTGCGC
CCCACGCCCCCCCCCCCTGCCCCCCCCCCCCCCACCACCCGCGCCCCCCC
ACCCCCTCCCCACCCCCTCCCACTCCAAAACCCCCAACCCTCCCTATCAC
TCCCCCCCCCCCTTCCACCCTCCCCGCCACCTTACCCACGTCCCTCACCA
CACTCTCCCCACCGC
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