DY260226

Overview
NameDY260226
Unique NameDY260226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.626e-45
Identity = 109/268 (40.67%), Postives = 140/268 (52.24%), Query Frame = 2
Query:   98 CGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            C     C  + +G G D G L  +++RE F+ +L +RND  CPARGFY YDAFI AAK+FPAF  +G++  RKRE+AAF AQT  ETTG  GW  AP G Y WGYCY R+++   +DYC      PC    QY GRGP+QLTWN NY +CG A+GVDLLNNPDL    P                              P+  +         R+PG+G  TNI + G++    W        +G +  +   LG    + L   NQR
Sbjct:   52 CKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN--PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQ-----AAGRVPGFGLITNIINGGLECGQGWN-AKVEDRIGFYKRYCDTLGVGYGNNLDCYNQR 310          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 7.892e-45
Identity = 109/270 (40.37%), Postives = 141/270 (52.22%), Query Frame = 2
Query:   98 CGSRV-VCGE---RDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-RLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            CGS    CG+         + GG L  ++S + F ++L +RND  C  + FY YDAF+ AAKAFP F N G+   +KREIAAF  QT  ETTGGWP AP G YAWGYC++R+  +  S YC      PC    QY+GRGPIQ++WN NY +CG A+GVDLLNNPDL                          +   + T G  P      A RLPGYG  TNI + G++   R + +     +G +  +    G    D L   +QRP G
Sbjct:   44 CGSTSEYCGDGCQSQCSGSSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE--QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDL--VATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLEC-GRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFG 308          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.758e-44
Identity = 108/267 (40.45%), Postives = 138/267 (51.69%), Query Frame = 2
Query:   95 NCGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            NC S+   G    G    GG+LG  +S  MF+ +L +RN+  C  + FY Y+AFI AA++FP FG SG+   RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL    P                           +  P++ +         RLPG+G  TNI + G++   R         +G +  +   LG  P D L   NQR
Sbjct:   61 NCQSQCPGGGPGPG---PGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNP-GDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADR-----AANRLPGFGVITNIINGGLEC-GRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQR 317          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.999e-44
Identity = 109/260 (41.92%), Postives = 137/260 (52.69%), Query Frame = 2
Query:  131 TGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            +G     G L  ++SRE F  +L +RND  CPARGFY YDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTG  GW  AP G YAWGYCY R+++ P S YC      PC    QY GRGP+QL+WN NY +CG A+GVDLLNNPDL    P                              P++ +         R+PGYG  TNI + G++    W        +G +  +   LG    + L   NQ P G
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELN-PPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDR-----AAGRVPGYGVITNIINGGLECGKGWN-AQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 316          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.095e-44
Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 2
Query:   86 SAQNCGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            +A    +R   G    G+      +  I+S +++  L  +++D  CPARGFY Y +F+ AA  FP F  +G    RKRE+AAF AQ   ETTGGW  AP G YAWG CY  +++ P S YC    +  PC     YHGRGPIQ++WN NY   G+ALG D L NP++
Sbjct:   25 AASGAEARWYGGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEIN-PQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEI 190          

HSP 2 Score: 51.2174 bits (121), Expect = 5.095e-44
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  604 FQSAIWFWMTAPAPKPSCHQVLTDEWKPSPLEV 702
            FQ+A+WFWMT    KPSCHQV+  E++P P +V
Sbjct:  199 FQTALWFWMTPRDTKPSCHQVMVGEYRPGPADV 231          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 5.115e-44
Identity = 107/259 (41.31%), Postives = 132/259 (50.97%), Query Frame = 2
Query:  119 GERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVS-RPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPP--LK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            G  D G   D G L  I+ +  F+ LL +RND RCPA GFY Y+AFI AAK FP FGN+G++ MRKREIAAF  QT  ETTGGWPDAP G YAWGYCY+++++ +P  D    Y  C    QY GRGPIQL+WN NY  CG+ L + LL  P+L                           +      GN  P        R+PGYG  TNI + GI+             +G +  +   LG      L    QRP G
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNY-QCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPEL---VETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFG 330          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.140e-43
Identity = 107/261 (41.00%), Postives = 139/261 (53.26%), Query Frame = 2
Query:  116 CGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARG-FYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPP-LK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            C  +  G     G+LG ++S  MF+ +L +RND  C  +G FY Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGWP AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL                          +   + T    P  +     R+PG+G  TNI + G++     + +     +G +  + G LG  P D L   NQR  G
Sbjct:   54 CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSP-GDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDL--VATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSD-SRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.488e-43
Identity = 103/244 (42.21%), Postives = 132/244 (54.10%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHP-PLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP 880
            +G I+ R++FE LL +RND  CPARGFY Y+AF+ AA AFPAFG +GN   RKRE+AAF  QT  ETTGGWP AP G ++WGYC+ +Q   P SDYC      PC    +Y+GRGPIQL++N NY   G A+GVDLL+NPDL                          ++  + T    P P      R PGYG  TNI + G++     +       +G +  + G  G      L   NQRP
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCF-KQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDL--VATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPD-DRVANRIGFYQRYCGAFGIGTGGNLDCYNQRP 328          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 4.330e-43
Identity = 108/260 (41.54%), Postives = 135/260 (51.92%), Query Frame = 2
Query:  131 TGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTG--GWPDAPGGEYAWGYCYIRQVSRPASDYCYR--YCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            +G     G L  ++SRE F  +L +RND  CPARGFY YDAFI AA++FPAF  +G++  RKREIAAF AQT  ETTG  GW  AP G YAWGYCY R+++ P S YC      PC    QY GRGP+QL+WN NY +CG A+GVDLLNNPDL    P                              P++ +         R  GYG  TNI + G++    W        +G +  +   LG    + L   NQ P G
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELN-PPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDR-----AAGRATGYGVITNIINGGLECGKGWN-AQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFG 294          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.386e-43
Identity = 107/261 (41.00%), Postives = 138/261 (52.87%), Query Frame = 2
Query:  140 GTDGGELGKILSREMFEDLLPYRNDVRCPARG-FYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            G   G+LG ++S  MF+ +L +RND  C  +G FY Y+AFI AA +FP FG +G+ T RKREIAAFFAQT  ETTGGW  AP G YAWGYC++R+   P  DYC      PC    +Y GRGPIQ++ N NY  CG A+GVDLLNNPDL                           T   P    H  +  +  P+       R+PG+G  TNI + G++     + +     +G +  + G LG  P D L   NQR  G
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSP-GDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDL----------VATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSD-SRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
The following BLAST results are available for this feature:
BLAST of DY260226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_THECC4.626e-4540.67Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_PEA7.892e-4540.37Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU1.758e-4440.45Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_GOSHI2.999e-4441.92Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI10_ORYSJ5.095e-4443.71Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI6_POPTR5.115e-4441.31Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_SOLTU1.140e-4341.00Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ1.488e-4342.21Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI4.330e-4341.54Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_SOLTU7.386e-4341.00Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260226 ID=DY260226; Name=DY260226; organism=Citrus clementina; type=EST; length=1079bp
TGATATCATAACCTTTGCTTTCCAAATGAGGCTCATTGGGTCCTTACTAA
TTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCCGCCCAGAATTGT
GGAAGCCGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGG
CGGTGAACTGGGCAAGATCCTCTCAAGGGAGATGTTTGAAGACTTGCTTC
CGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACCCTTACGAT
GCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAA
TGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCG
ATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGG
GGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTA
TCGTTACTGTCCATGTCCTTTGCCAGGGCAATACCATGGCCGAGGTCCCA
TTCAACTCACTTGGAATTGCAATTACCTAAGGTGCGGAGAAGCCTTGGGG
GTGGACCTGTTGAACAACCCAGACCTTCCCTGCCACTGATCCCAGTACCT
ATCTTCCAGTCAGCCATCTGGTTCTGGATGACTGCCCCAGCACCAAAGCC
CTCCTGCCACCAAGTCCTTACCGACGAATGGAAACCATCCCCCCTTGAAG
TAAACCCCCGCCCGCCTTCCCGGATACGGTCCCACCACCAATATTACCCA
CCGTGGAATTCAATTGCGGCCCAGGTGGGAATGAACGCCGTACCCCACCG
TATTGGGCTCCTTTCCCCCTTTCGGGGGCCGTTTGGGATTCCGCCCGGCG
GACATCCTTGTTGCCACCAACCAACGCCCTTAGGGCCCTAACTCGATCGA
CCCACCCTACGTGACCCCCCTGGATCCACGCTTCATTCACAACCCCCTCC
ACAAAAACCTCCTCTCAACAAACCTTTTCACTGCCTCCCCTCTGAGGGGG
CAACAACCCACTTTTTTCCCCTCCCCCACCCCCCCAATTCTCCCCAAACC
ACATCTAAAACCGACCCCCCCCTTGCCAT
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