DY260226

Overview
NameDY260226
Unique NameDY260226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 6.471e-39
Identity = 92/216 (42.59%), Postives = 119/216 (55.09%), Query Frame = 2
Query:  149 GGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQ 763
            GG +  I+SR +F+ +L +RND  C A+GFY YDAF+ AA AFP FG +G+   RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     Y+GRGPIQL+ N NY   G A+GVDLL NPDL                           T   P   +H  +  + +P+       R+PG+G  TNI + GI+
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDL----------VATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIE 281          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 160.229 bits (404), Expect = 1.883e-38
Identity = 98/247 (39.68%), Postives = 128/247 (51.82%), Query Frame = 2
Query:   98 CGSRVVCGE----RDTGHG----------TDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQ 763
            CGS   CG+    + +G G          + GG +  I+SR +F+ +L +RND  C A+GFY YDAF+ AA AF  FG +G    RKRE+AAF AQT  ETTGGW  AP G +AWGYC+ +Q     S+YC      PC     Y+GRGPIQL+ N NY   G A+GVDLL NPDL                           T   P   +H  +  + +P+       R+PG+G  TNI + GI+
Sbjct:   43 CGSTPYCGDGCQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCF-KQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDL----------VATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIE 278          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 4.194e-38
Identity = 93/231 (40.26%), Postives = 121/231 (52.38%), Query Frame = 2
Query:   86 SAQNCGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPAS-DYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-RLPGYGPTTNITHRGIQ 763
            SA  CG     G      G+ G  +  I+SR +F+ +L +RND  CPA  FY YDAF+ AA AFP F  +G +    KRE+AAF AQT  ETTGGW  AP G YAWGYC+  +    A  DYC +    PC    +Y+GRGPIQL++N NY   G+A+G DLL +PDL                          +  ++ T    P      A R+PGYG  TNI + G++
Sbjct:   61 SAAGCGG----GGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDL--VASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLE 285          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.813e-37
Identity = 70/140 (50.00%), Postives = 90/140 (64.29%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            +G I++ ++F ++L  RND RCPA GFY YDAFI AA +FP FG SG++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ     SD            +Y+GRGPIQLT   NY + G A+  DL+NNPDL
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ--NDQSD------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDL 150          

HSP 2 Score: 41.5874 bits (96), Expect = 6.813e-37
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  604 FQSAIWFWMTAPAPKPSCHQVLTDEWKPS 690
            F++AIWFWMT    KPS H V+   W PS
Sbjct:  159 FKTAIWFWMTPQDNKPSSHDVIIGSWTPS 187          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.340e-35
Identity = 83/204 (40.69%), Postives = 107/204 (52.45%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL----PCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRG 757
            +G I++R MFE +L +R D  C    FY YDAFI+AA  FP FG +GN+  R+RE+AAFF QT  ETTGGW  AP G +AWGYC + +++             P    Y+GRGPIQLT   NY   G+ALG+DL+NNPDL    P                           +  P+  +      +  RLPGYG  TNI + G
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEIT-------------PSDPPYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDR-----SSGRLPGYGMATNIINGG 211          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.813e-34
Identity = 83/209 (39.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:  149 GGELG--KILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQ 763
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C      PC     YH RGP+Q+ +N NY   GEA+G DLL NP+L                              +       P      R PGYG TTNI   G+Q
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQ 292          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.813e-34
Identity = 83/209 (39.71%), Postives = 106/209 (50.72%), Query Frame = 2
Query:  149 GGELG--KILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYC--PCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPARLPGYGPTTNITHRGIQ 763
            GG  G   +++ + FE +LP+R+D  CPARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT   T+       GG Y+WGYCY ++V    SD+C      PC     YH RGP+Q+ +N NY   GEA+G DLL NP+L                              +       P      R PGYG TTNI   G+Q
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQ 292          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 8.185e-34
Identity = 96/257 (37.35%), Postives = 133/257 (51.75%), Query Frame = 2
Query:  140 GTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-------RLPGYGPTTNITHRGIQ--LRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            GT     G I++RE+FE +L +RN+  CPA+GFY YDAFI AA +FP FG +G++T RK+EIAAFF QT  ET GG      G +  GYC++RQ+ +  SD            +Y+GRGPIQLT   NY R G+ +GV  DL+NNPDL                          A  + P+  N    + TP+       R+PGYG  TNI + G++  + P    T   + +G +  + G L     + L   NQ+
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQ--SD------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDL--------VATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPN---TAVESRIGFYRRYCGMLNVPTGENLDCNNQK 248          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.306e-33
Identity = 86/221 (38.91%), Postives = 117/221 (52.94%), Query Frame = 2
Query:  140 GTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL------K*TPA-------RLPGYGPTTNITHRGIQ 763
            G+   ++G I++ ++F ++L  RND RCPA+GFY YDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   A  G +A GYC++R+ ++  S              ++GRGPIQLT   NY   G+A+G DL+NNPDL                              +   GN P        + TP+       R PGYG  TNI + GI+
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-------------FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFW--------------MTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIE 205          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.229e-31
Identity = 84/209 (40.19%), Postives = 112/209 (53.59%), Query Frame = 2
Query:  140 GTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-RLPGYGPTTNITHRGIQ 763
            GT    +G I++ ++F+ +L  RND RC A  FY YDAFI AA +FP FG +G++T RK+EIAAFF QT  ETTGG   +P G YA GYC++R+ ++             +   Y+GRGPIQLT   NY   G+A+  DL+NNPDL                          +   + T    P    T A R+PGYG  TNI + GI+
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQ-------------MGNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDL--VATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIE 212          
The following BLAST results are available for this feature:
BLAST of DY260226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIA_SECCE6.471e-3942.59Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI1_HORVU1.883e-3839.6826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI12_ORYSJ4.194e-3840.26Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC6.813e-3750.00Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI11_ORYSJ4.340e-3540.69Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ2.813e-3439.71Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.813e-3439.71Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIA_SOLCI8.185e-3437.35Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIB_SOLLC5.306e-3338.91Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_PETHY2.229e-3140.19Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260226 ID=DY260226; Name=DY260226; organism=Citrus clementina; type=EST; length=1079bp
TGATATCATAACCTTTGCTTTCCAAATGAGGCTCATTGGGTCCTTACTAA
TTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCCGCCCAGAATTGT
GGAAGCCGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGG
CGGTGAACTGGGCAAGATCCTCTCAAGGGAGATGTTTGAAGACTTGCTTC
CGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACCCTTACGAT
GCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAA
TGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCG
ATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGG
GGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTA
TCGTTACTGTCCATGTCCTTTGCCAGGGCAATACCATGGCCGAGGTCCCA
TTCAACTCACTTGGAATTGCAATTACCTAAGGTGCGGAGAAGCCTTGGGG
GTGGACCTGTTGAACAACCCAGACCTTCCCTGCCACTGATCCCAGTACCT
ATCTTCCAGTCAGCCATCTGGTTCTGGATGACTGCCCCAGCACCAAAGCC
CTCCTGCCACCAAGTCCTTACCGACGAATGGAAACCATCCCCCCTTGAAG
TAAACCCCCGCCCGCCTTCCCGGATACGGTCCCACCACCAATATTACCCA
CCGTGGAATTCAATTGCGGCCCAGGTGGGAATGAACGCCGTACCCCACCG
TATTGGGCTCCTTTCCCCCTTTCGGGGGCCGTTTGGGATTCCGCCCGGCG
GACATCCTTGTTGCCACCAACCAACGCCCTTAGGGCCCTAACTCGATCGA
CCCACCCTACGTGACCCCCCTGGATCCACGCTTCATTCACAACCCCCTCC
ACAAAAACCTCCTCTCAACAAACCTTTTCACTGCCTCCCCTCTGAGGGGG
CAACAACCCACTTTTTTCCCCTCCCCCACCCCCCCAATTCTCCCCAAACC
ACATCTAAAACCGACCCCCCCCTTGCCAT
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