DY260226

Overview
NameDY260226
Unique NameDY260226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 8.471e-31
Identity = 90/247 (36.44%), Postives = 125/247 (50.61%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-------RLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQR 877
            +G I++ ++F ++L  RND RCPA GFY YDAFI AA +FP FG +G++T R++EIAAFF QT  ETTGG   A    +  GYC++RQ     SD            +Y+GRGPIQLT   NY + G A+G +L+NNPDL                             + P++ +    + TP+       R+PGYG  TNI + GI+             +G +  + G L   P + L   NQR
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ--NDQSD------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDL--------VATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRN-DAVEDRIGYYRRYCGMLNVAPGENLDCYNQR 248          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.887e-30
Identity = 80/216 (37.04%), Postives = 110/216 (50.93%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL------K*TPA-------RLPGYGPTTNITHRGIQ 763
            +G ++++ +F  +LP R++ +CPARGFY YDAFI AA +FPAFG SG    + +RE+AAFF QT  ETTGG       ++ WGYC+  ++++  S              Y+GRGPIQLT   NY   G ALG+DL+ NPDL                              +   GN P        + TP+       R+PGYG  TNI + GI+
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP------------PYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFW--------------MTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIE 220          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 5.193e-30
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 2
Query:  131 TGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRY-CPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            +G+ T       +++  +F+ +  +R D  CP++GFY Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I   +   +D+C     PC    +Y  RGPIQLT N NY   G+A+G DL+ NPDL
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDL 267          

HSP 2 Score: 36.5798 bits (83), Expect = 5.193e-30
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  592 PVPIFQSAIWFWMTAPAPKPSCHQVL 669
            P+  F++A+WFWM+    KPSCH ++
Sbjct:  272 PIISFKTALWFWMSQHDNKPSCHDIV 297          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 7.171e-30
Identity = 62/136 (45.59%), Postives = 84/136 (61.76%), Query Frame = 2
Query:  173 SREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC--YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            +  MFE +LP RN+  CP +GFY YDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++ P SDYC        P    Y+GRGP+QL WN NY  CG  LG +LL+ P+
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPE 202          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 6.070e-29
Identity = 86/252 (34.13%), Postives = 110/252 (43.65%), Query Frame = 2
Query:  134 GHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPLK*TPA-RLPGYGPTTNITHRGIQLRPRWE*TPYPTVLGSFPPFGGRLGFRPADILVATNQRP*G 886
            G G   G L  I+   MF+D+L YRND +CPA GFY Y+AFI AAK FP FGN+G++ MRKREIAAF  QT  ET G WP A G +Y WGYC++                                 N NY  CG+ L + LL  P+L                          +  ++ T    P    + A R+PGYG  TNI + GI+             +G +  +   LG      L    QRP G
Sbjct:   77 GGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPEL--VETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFG 293          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.692e-27
Identity = 79/211 (37.44%), Postives = 103/211 (48.82%), Query Frame = 2
Query:  158 LGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCYRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDLPCXXXXXXXXXXXXXXXXXXXXXXXXATKSLPTNGNHPPL--K*TPA-------RLPGYGPTTNITHRGIQ 763
            +  ++S  +FE +L +R        GFY YDAFI AAK+FPAF  +G+  +RKRE+AAF AQT  ETTGGWP AP G Y  G           SD             Y GRGPIQ+++N NY   G+A+GVDLL NPDL                           T   P   +H  +  + +P+       R+PGYG  TNI   G++
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDL----------VTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVE 171          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.880e-22
Identity = 59/162 (36.42%), Postives = 85/162 (52.47%), Query Frame = 2
Query:   98 CGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            CG+    G  D    T+   +  I++ E F  L+   +D  C A+GFY  DAF+ AA  +P+FG +G+    KREIAAFFA    ET               +CYI ++  P+ +YC       PC     Y+GRGP+Q++WN NY   G+++G D L +PD
Sbjct:   49 CGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVAQADD-GCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPD 195          

HSP 2 Score: 23.8682 bits (50), Expect = 1.880e-22
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  592 PVPIFQSAIWFW 627
            PV  FQ+A+W+W
Sbjct:  201 PVLAFQTALWYW 212          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.134e-20
Identity = 59/167 (35.33%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   98 CGSRVVCGERDTGHGTD----GGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            CG+    G   +  GT     GG +G I+++  F  ++       C  + FY  D+FI AA  FP F NS    + +REIA  FA    ET               +CYI +++  + DYC    R  PC     Y GRGPIQL+WN NY  CG++L ++LL  P+L
Sbjct:   48 CGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGG-GCAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPEL 196          

HSP 2 Score: 24.6386 bits (52), Expect = 6.134e-20
Identity = 7/18 (38.89%), Postives = 11/18 (61.11%), Query Frame = 1
Query:  592 PVPIFQSAIWFWMTAPAP 645
            P   F++ +WFWM +  P
Sbjct:  201 PTVAFRTGLWFWMNSVRP 218          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.478e-19
Identity = 55/152 (36.18%), Postives = 75/152 (49.34%), Query Frame = 2
Query:  134 GHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASD-YCYR----YCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            G G  G  +  I+S+  F+ ++  +    CP + FY   AF+ A    P FGN G+    KREIAAFFA    ETT               C+I +      D YC +      PC    +Y+GRGP+QL+WN NY   G+A+G D L NP+
Sbjct:   79 GTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPE 214          

HSP 2 Score: 24.2534 bits (51), Expect = 8.478e-19
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  604 FQSAIWFWMT 633
            F++A+WFWMT
Sbjct:  224 FKAAMWFWMT 233          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.436e-18
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 2
Query:  119 GERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNP 571
            G    G G  G  +  +++   F  +        C  + FY   AF+ A K +P F + G++   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +Y+GRGP+Q++WN NY   G A+G D L +P
Sbjct:   56 GRGGGGSGGGGANVASVVTSSFFNGIKNQAGS-GCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINK-SNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDP 194          

HSP 2 Score: 24.2534 bits (51), Expect = 1.436e-18
Identity = 19/74 (25.68%), Postives = 31/74 (41.89%), Query Frame = 1
Query:  595 VPIFQSAIWFWMTAPAPKPSCHQVL------TDEWKPSPLEVNPRPPSRIRSHHQYYPPWNSIAAQVGMNAVPH 798
            V  F++A+WFWM       S H V+      T       LE     P+++ +   YY        Q+G++  P+
Sbjct:  202 VVAFKAALWFWMN------SVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYY---RQYCRQLGVDPGPN 266          
The following BLAST results are available for this feature:
BLAST of DY260226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIQ_TOBAC8.471e-3136.44Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ1.887e-3037.04Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI5.193e-3040.00Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI8_POPTR7.171e-3045.59Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_POPTR6.070e-2934.13Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_AVESA9.692e-2737.44Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI6_ORYSJ1.880e-2236.42Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA6.134e-2035.33Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU8.478e-1936.18Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE1.436e-1832.47Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260226 ID=DY260226; Name=DY260226; organism=Citrus clementina; type=EST; length=1079bp
TGATATCATAACCTTTGCTTTCCAAATGAGGCTCATTGGGTCCTTACTAA
TTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCCGCCCAGAATTGT
GGAAGCCGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGG
CGGTGAACTGGGCAAGATCCTCTCAAGGGAGATGTTTGAAGACTTGCTTC
CGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACCCTTACGAT
GCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAA
TGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCG
ATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGG
GGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTA
TCGTTACTGTCCATGTCCTTTGCCAGGGCAATACCATGGCCGAGGTCCCA
TTCAACTCACTTGGAATTGCAATTACCTAAGGTGCGGAGAAGCCTTGGGG
GTGGACCTGTTGAACAACCCAGACCTTCCCTGCCACTGATCCCAGTACCT
ATCTTCCAGTCAGCCATCTGGTTCTGGATGACTGCCCCAGCACCAAAGCC
CTCCTGCCACCAAGTCCTTACCGACGAATGGAAACCATCCCCCCTTGAAG
TAAACCCCCGCCCGCCTTCCCGGATACGGTCCCACCACCAATATTACCCA
CCGTGGAATTCAATTGCGGCCCAGGTGGGAATGAACGCCGTACCCCACCG
TATTGGGCTCCTTTCCCCCTTTCGGGGGCCGTTTGGGATTCCGCCCGGCG
GACATCCTTGTTGCCACCAACCAACGCCCTTAGGGCCCTAACTCGATCGA
CCCACCCTACGTGACCCCCCTGGATCCACGCTTCATTCACAACCCCCTCC
ACAAAAACCTCCTCTCAACAAACCTTTTCACTGCCTCCCCTCTGAGGGGG
CAACAACCCACTTTTTTCCCCTCCCCCACCCCCCCAATTCTCCCCAAACC
ACATCTAAAACCGACCCCCCCCTTGCCAT
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