DY260226

Overview
NameDY260226
Unique NameDY260226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1079
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.115e-18
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 2
Query:  116 CGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYCY--RYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPDL 577
            C +   G GT    +  I+++E F D +  +    CP + FY    F+EA  A+P FG    +  RKREIAA+FA    ET                CYI +    A++YC   +  PC    +Y GRGP+QL+WN NY+  G+ L  D LN+PD+
Sbjct:   34 CWDPCEGDGTL--TVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDI 173          

HSP 2 Score: 21.9422 bits (45), Expect = 4.115e-18
Identity = 5/13 (38.46%), Postives = 11/13 (84.62%), Query Frame = 1
Query:  592 PVPIFQSAIWFWM 630
            P+  F++++WFW+
Sbjct:  178 PIISFKTSLWFWI 190          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.013e-18
Identity = 50/167 (29.94%), Postives = 73/167 (43.71%), Query Frame = 2
Query:   83 GSAQNCGSRVVCGERDTGHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            G     G     G      G   G   + +  E F + +  +    C  + FY   +F+ AA+++  F N       KREIAAFFA    ET                CYI +++    DYC    +  PC    +Y+GRGP+Q++WN NY   G+ +G D L +PD
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPD 211          

HSP 2 Score: 29.261 bits (64), Expect = 9.013e-18
Identity = 16/58 (27.59%), Postives = 27/58 (46.55%), Query Frame = 1
Query:  592 PVPIFQSAIWFWMTAPAPKPSCHQVLTDEWKPS------PLEVNPRPPSRIRSHHQYY 747
            P   F++A+WFWM       + HQV++  +  +       LE N + P  + +   YY
Sbjct:  217 PTISFKTALWFWMN------NVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYY 268          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.359e-17
Identity = 48/150 (32.00%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  134 GHGTDGGELGKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            G G+ G  +  +++   F  +        C  + FY   AF+ A  A+P F + G E   KREIAAFFA    ET               +CYI ++++ ++ YC    R  PC    +Y+GRGP+Q++WN NY   G  +G + L +P+
Sbjct:   72 GGGSGGANVANVVTDAFFNGIKNQAGS-GCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINK-SNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPN 206          

HSP 2 Score: 23.8682 bits (50), Expect = 7.359e-17
Identity = 14/54 (25.93%), Postives = 25/54 (46.30%), Query Frame = 1
Query:  604 FQSAIWFWMTAPAPKPSCHQVLTDEWKPS------PLEVNPRPPSRIRSHHQYY 747
            F++A+WFWM       + H V+   +  +       LE N   P+++ +   YY
Sbjct:  216 FKTALWFWMN------NVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYY 263          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.560e-17
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 2
Query:  221 CPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC---YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            C  + FY   +F+ AA ++  F         KREIAAFFA    ET                CYI +++  + DYC    +  PC    +Y+GRGP+Q++WN NY   G+ +G D L +PD
Sbjct:  107 CAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPD 214          

HSP 2 Score: 28.4906 bits (62), Expect = 9.560e-17
Identity = 16/58 (27.59%), Postives = 26/58 (44.83%), Query Frame = 1
Query:  592 PVPIFQSAIWFWMTAPAPKPSCHQVLTDEWKPS------PLEVNPRPPSRIRSHHQYY 747
            P   F++A+WFWM       + HQV+   +  +       LE N + P  + +   YY
Sbjct:  220 PTISFKTALWFWMN------NVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYY 271          
BLAST of DY260226 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.104e-16
Identity = 62/189 (32.80%), Postives = 80/189 (42.33%), Query Frame = 2
Query:   86 SAQNCG-SRVVC---------GERDTGHGTDGGEL------------GKILSREMFEDLLPYRNDVRCPARGFYPYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGDETTGGWPDAPGGEYAWGYCYIRQVSRPASDYC----YRYCPCPLPGQYHGRGPIQLTWNCNYLRCGEALGVDLLNNPD 574
            SAQNCG +  +C         GE   G G   G                IL+ +    ++  + D  C  + FY  DAF+ A  ++  FG  G+E   KREIAA FA    ET               +CYI ++   + DYC        PC     YHGRGPIQL+WN NY   G A   D L  P+
Sbjct:   22 SAQNCGCAEGLCCSQYGYCGTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPE 196          

HSP 2 Score: 23.483 bits (49), Expect = 2.104e-16
Identity = 12/48 (25.00%), Postives = 22/48 (45.83%), Query Frame = 1
Query:  604 FQSAIWFWMTAPAPKPSCHQVLTDEWKPSPLEVNPRPPSRIRSHHQYY 747
            F++A+W+WM    P  +     T       LE +   P+ +++   YY
Sbjct:  206 FKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYY 253          
The following BLAST results are available for this feature:
BLAST of DY260226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_DIOJA4.115e-1835.90Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_ORYSJ9.013e-1829.94Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE7.359e-1732.00Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ9.560e-1734.71Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.104e-1632.80Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260226 ID=DY260226; Name=DY260226; organism=Citrus clementina; type=EST; length=1079bp
TGATATCATAACCTTTGCTTTCCAAATGAGGCTCATTGGGTCCTTACTAA
TTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCCGCCCAGAATTGT
GGAAGCCGCGTTGTGTGCGGTGAACGTGATACTGGCCACGGGACGGATGG
CGGTGAACTGGGCAAGATCCTCTCAAGGGAGATGTTTGAAGACTTGCTTC
CGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCTACCCTTACGAT
GCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTCTGGAAA
TGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCG
ATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATATGCTTGG
GGATATTGCTATATTAGGCAAGTTAGCCGCCCTGCGTCCGACTACTGTTA
TCGTTACTGTCCATGTCCTTTGCCAGGGCAATACCATGGCCGAGGTCCCA
TTCAACTCACTTGGAATTGCAATTACCTAAGGTGCGGAGAAGCCTTGGGG
GTGGACCTGTTGAACAACCCAGACCTTCCCTGCCACTGATCCCAGTACCT
ATCTTCCAGTCAGCCATCTGGTTCTGGATGACTGCCCCAGCACCAAAGCC
CTCCTGCCACCAAGTCCTTACCGACGAATGGAAACCATCCCCCCTTGAAG
TAAACCCCCGCCCGCCTTCCCGGATACGGTCCCACCACCAATATTACCCA
CCGTGGAATTCAATTGCGGCCCAGGTGGGAATGAACGCCGTACCCCACCG
TATTGGGCTCCTTTCCCCCTTTCGGGGGCCGTTTGGGATTCCGCCCGGCG
GACATCCTTGTTGCCACCAACCAACGCCCTTAGGGCCCTAACTCGATCGA
CCCACCCTACGTGACCCCCCTGGATCCACGCTTCATTCACAACCCCCTCC
ACAAAAACCTCCTCTCAACAAACCTTTTCACTGCCTCCCCTCTGAGGGGG
CAACAACCCACTTTTTTCCCCTCCCCCACCCCCCCAATTCTCCCCAAACC
ACATCTAAAACCGACCCCCCCCTTGCCAT
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