DY260228

Overview
NameDY260228
Unique NameDY260228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.578e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  101 VTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            VTC  V   L PC++Y+   GA     NCC GVR+L  AA++ ADR+  C C+K A        Y+  +AA L  +CG+ + Y +SP+ +C+ VQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.578e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  101 VTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            VTC  V   L PC++Y+   GA     NCC GVR+L  AA++ ADR+  C C+K A        Y+  +AA L  +CG+ + Y +SP+ +C+ VQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.997e-13
Identity = 35/112 (31.25%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   50 LVLVCLMGSAFVS--TKAQVTCRTVVNDLSPCISYVSYG-GAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 376
            L ++ ++G  F+   +++ ++C  V+ DL PC+SY++ G G     CC+GV++L  A  ++AD++  C C+K   + ++    +  LA  L   CG ++P   SP+ DC+ V
Sbjct:    7 LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT---VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.976e-12
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   35 VTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKC---GLNIPYQISPSTDCSRV 376
            V G ++ ++ + G+  V  +  ++C  VV+ ++PC +Y+  G A T    CC  +R L +  ++T DRQ VC CLK           +LG AA LPG C    LN+P  ISP+ DCS+V
Sbjct:   12 VVGLVVTMMNVWGA--VPVEGAISCNQVVSAMTPCATYL-IGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSYG---VKLGKAANLPGLCKVTDLNVP--ISPNVDCSKV 122          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.298e-11
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 2
Query:   47 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 376
            +LV+  L+G A+      + C  V   L+ C+ Y+  GG  +  CCNG+ +L  AA   ADRQ  C CLK   + I         A  LP KCG+NI    S + DC+ +
Sbjct:   13 LLVITILLGIAYHGEA--IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDD--FAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of DY260228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP_AMACA1.578e-1340.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP1.578e-1340.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP8_ARATH5.997e-1331.25Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP_PINTA2.976e-1236.97Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_ARATH4.298e-1135.45Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260228 ID=DY260228; Name=DY260228; organism=Citrus clementina; type=EST; length=1066bp
CATAATGGCTAGCTTCGTAATGCTGATGAAACTTGTGACAGGCTGCATCT
TGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAA
GTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGT
GTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACAC
TCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGC
TTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACT
CGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCA
GCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGC
CATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAA
TAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAAGAAGT
TGTTAGCGTCATCTGGTGCGATTTATGTTGTCCCAGGTTTCGTTAGGTTC
CGTCCCCCCCATAACTACTAAAGAATAAAATTTTGGTAAGCTCACCTCTA
TGGAGCGAACTTTCGCTATTACGCTGTCTATAAAAAAAAAAAAAAGAAAA
CCCCCCACTTCCTTCAACAATCCTTGACAACAAAAAAAACGCCCAGCTTA
TAATTTCTTCTCCCACCAAACCCGACCCCACCACCCTAAAAACTAACCAT
TATTTACCCTCACCCGCACATCTCGCTCCACAGCGCTCCACTAAACCCCT
CGCTTCTCCTCCCTCCCCCCCCTACCTCCTCCCCATACCCCTCACGTCTT
ACATCCAACTATCCCCGCCCGCTCCCACCAACCTACCCCCCCCCCCCCTA
TATCCAACATACCTTATTTTAAATAATAAACAATTACAATTATCGCGACA
CGCCAATCCCAACCAACAAGAACCTGTACAACCCTGCTGCGCCCCCTCCC
CACCTCCACCCCCCTCCCCCCCTACTCCCCGCCCACTCACACATCAACTC
TCAATTATATAACTTC
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