DY260235

Overview
NameDY260235
Unique NameDY260235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_RHOCA (NADH-quinone oxidoreductase subunit N OS=Rhodobacter capsulatus GN=nuoN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.755e-15
Identity = 48/135 (35.56%), Postives = 73/135 (54.07%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTR--VKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVL 401
            I H  +   G   GT  G+ S+L+ + IY +M +  FA +L++ +    V  IA L  L+KT+P+ A    + +FS AG+PP+ GF +KF +  AA+G G  ++    VV SVIG +   R+     FG   A L
Sbjct:  302 ISHMGFGLLGLAAGTAAGVESMLLYMTIYIVMNVGTFAFILSMERDGKPVTEIAALNMLSKTDPVKAFALLVLLFSLAGVPPMLGFFAKFAVIKAAIGAGFVWVPVAAVVASVIGAFYYLRIVYFMYFGEKSAPL 436          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_JANSC (NADH-quinone oxidoreductase subunit N OS=Jannaschia sp. (strain CCS1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.699e-15
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFG 383
            I H  +   G   GT +G+ ++LI + IY  M I  FA +L + +    V  I+ L   A   P  A+   + MFS AG+PPL GF  K+ +  AA+  G  +LA  GV+ SVIG +   R+  +  FG
Sbjct:  303 ISHMGFALMGLSAGTAQGVEAMLIYMAIYVAMNIGTFAFILTMERNGRHVTEISSLSAFASKEPTKALAILVMMFSLAGVPPLLGFFGKYAVLVAAVDAGLVWLAIAGVIASVIGAFYYIRIVYLMYFG 431          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: M1330_ARATH (Uncharacterized mitochondrial protein AtMg01330 OS=Arabidopsis thaliana GN=AtMg01330 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.137e-15
Identity = 43/60 (71.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  614 VLPAHC*NHPSRARAGPRFRKMKGPQV*IGGYKPPIPLGAENQSTSRCETAFSILFGKER 793
            +LPA C N  SR   GP FRKMKGP+V IGGYK PI LGAEN+STSRC+TAFS L GKER
Sbjct:    1 MLPAGCWNDTSRD--GPGFRKMKGPKVEIGGYKFPISLGAENESTSRCDTAFSFLVGKER 58          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_PROMA (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus GN=ndhB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.367e-14
Identity = 45/116 (38.79%), Postives = 64/116 (55.17%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT EG  ++++ +  Y  M + AFA I+L   +T    IA    L + +P+  +  SL + S  GIPP+ GF  K YLFFA    G Y L  VG+VTSV+  +
Sbjct:  323 IGQAGFVMIGLVCGTEEGYAAMILYMAAYLFMNLGAFACIILFSLRTGSDRIADYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWSDGQYLLVIVGLVTSVVSIY 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_ANAD2 (NADH-quinone oxidoreductase subunit N OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=nuoN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.332e-14
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEG-----IPSLLIGIFIYALMTIDAFAIVLAL-RQTRVKY-------IAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IGHA Y+  G     + G     +  LL  +  Y    I AFA+V AL R+TR  +       +     LA+  P  A   ++ +FS AG+PP AGF  KFY+F AA+G G Y LA +GV+TSV+G +
Sbjct:  303 IGHAGYLLVGVVSAVVAGARDKALAGLLFYLAAYTATVIGAFAVVGALERRTRGDFEPADAWDLDRFAGLARRRPALAFAMAVFLFSLAGVPPTAGFIGKFYIFKAAMGAGLYGLAVLGVLTSVLGAY 430          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_PROMT (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.332e-14
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+    L + +P+  +  SL + S  GIPP+ GF  K YLFFA    G Y L +VG+VTSVI  +
Sbjct:  320 IGQAGFVMIGLVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDQISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADGQYLLVTVGLVTSVISIY 435          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON1_HERA2 (NADH-quinone oxidoreductase subunit N 1 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.046e-14
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLAL--RQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I HA Y+  G    + +GI +  + +  Y L  + AFA+++AL  R   V  ++ L  L K +P+ A+  ++ MFS AG+PP AGF SKF +F AA      +LA +GVVTSVI  +
Sbjct:  313 IAHAGYMLLGVLAASEKGISAFTVYLLAYTLTNLGAFAVLIALENRGMPVFELSDLRGLGKRSPLLALAMTVFMFSLAGVPPTAGFASKFGIFRAAWDANLDYLAIIGVVTSVISAF 429          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_THEEB (NAD(P)H-quinone oxidoreductase subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.196e-14
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRA 407
            IG A ++  GF  GT  G  S+L  + +Y  M + AF  ++L   +T    I+    L + +P+  +  SL + S  GIPPLAGF  K YLF+A    GAY L  +G++TSVI  +   R+ ++     P+ +  A
Sbjct:  308 IGQAGFVMIGFVVGTEAGYASMLFYLLVYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSEA 443          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_SPHWW (NADH-quinone oxidoreductase subunit N OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoN PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.786e-14
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3
Query:   30 GFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTR---VKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAP 410
            G   G+ +G+ + +  + +Y  MT+ +F  VL +R      V+ IA L  L+++ P  A  F++ MFS AGIPPL GF  KF +F A +  G + LA VG+ TSVIG +   ++ +   F  P     AP
Sbjct:  312 GLAAGSADGVAATMTYMAVYVAMTLGSFICVLQMRGQDGQPVETIASLSGLSRSRPGLAAAFAIFMFSLAGIPPLFGFWPKFLVFDALVRAGFWPLAMVGIATSVIGAFYYLKIVKTIYFDDPAPAEFAP 441          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_MICAN (NAD(P)H-quinone oxidoreductase subunit 2 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.862e-14
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSV 335
            IG A ++  G   GT  G  S++  + IY  M + AFA ++L   +T    IA    L + +P+  +  S+ + S  GIPPLAGF  K YLF+A    G Y L  VG+VTSV
Sbjct:  313 IGQAGFVMIGLTAGTDAGYSSMIFYLLIYLFMNLGAFACVILFALRTGTDQIAEYSGLYQKDPLLTLCLSICLLSLGGIPPLAGFFGKIYLFWAGWQAGLYALVLVGLVTSV 424          
The following BLAST results are available for this feature:
BLAST of DY260235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NUON_RHOCA2.755e-1535.56NADH-quinone oxidoreductase subunit N OS=Rhodobact... [more]
NUON_JANSC4.699e-1535.66NADH-quinone oxidoreductase subunit N OS=Jannaschi... [more]
M1330_ARATH6.137e-1571.67Uncharacterized mitochondrial protein AtMg01330 OS... [more]
NU2C_PROMA1.367e-1438.79NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NUON_ANAD22.332e-1439.06NADH-quinone oxidoreductase subunit N OS=Anaeromyx... [more]
NU2C_PROMT2.332e-1437.93NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NUON1_HERA23.046e-1439.32NADH-quinone oxidoreductase subunit N 1 OS=Herpeto... [more]
NU2C_THEEB5.196e-1434.56NAD(P)H-quinone oxidoreductase subunit 2 OS=Thermo... [more]
NUON_SPHWW6.786e-1436.15NADH-quinone oxidoreductase subunit N OS=Sphingomo... [more]
NU2C_MICAN8.862e-1439.29NAD(P)H-quinone oxidoreductase subunit 2 OS=Microc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260235 ID=DY260235; Name=DY260235; organism=Citrus clementina; type=EST; length=1038bp
CAATTGGACATGCTTGTTATATTCCTACTGGTTTCCCATGTGGAACCATA
GAAGGAATTCCATCCCTACTAATTGGTATCTTTATTTATGCCTTAATGAC
GATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAAT
ATATAGCGGGTTTGGGCCCCCTAGCCAAAACGAATCCTATTTCGGCTATT
ACCTTCTCCCTTACTATGTTCTCATACGCGGGAATACCCCCGTTAGCCGG
CTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTT
ACTTCCTAGCCTCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCG
GCCGGAAGGTTGCCACGAGTAAGTCAGTTTGGGGGACCGAAGGCAGTTCT
CCGTGCACCGGACACGTAGTTTACCCAATCAGTTGCGACACGGATGGGAA
TGCATGCTACGAAAGATAGGGTAGAGTCTGATACATCAACCGTCTACTCA
ATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGG
TGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCG
ATCGTATACTGAGGTGCTCCCCGCCCATTGTTGAAACCACCCAAGCCGGG
CCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCCCCAAGTCTAAATA
GGGGGTTACAAACCCCCCATCCCATTGGGGGCCGAAAACCAATCCACCTC
TCGATGTGAGACAGCCTTTTCCATTTTATTTGGGAAAGAACGGCCAAGTC
CCTCCCAACCCCCCAATGAAAAATAAAAGGAAAACCCAAGCCCCCAAGGG
CCCCCCAACCCCCAGCCGAAACCGGCCCCGAAAAAAAATAATGGTGGAGG
AAAAACCCCCCCACCCCCTTCCCCTCCCCTCCCGGGGCCCAACCCTGCCC
TCCTTTCCCCGGCCCAATCCAAGGATTGGGGCCCTCCTCCCCCCCCCCAC
CCCACACTACCCATTCCAAAAAAATCCCTTTTTGGAAT
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