DY260235

Overview
NameDY260235
Unique NameDY260235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp. (strain WH7803) GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT +G  ++++    Y  M + AFA I+L   +T    IA    L + +P+  +  SL + S  GIPP+ GF  K YLFFA      Y L  VG++TSVI  +
Sbjct:  323 IGQAGFVMIGLVCGTEDGFAAMVLYTAAYLFMNLGAFACIILFSIRTGSDRIADYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYVLVVVGLITSVISIY 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_SYNJB (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp. GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAF-AIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G   GT  G  SL+  + +Y +M + AF  I L   +T    I     L + +P   +  S+ + S  G+PPLAGF  K YLF+A    GAY L  VG+VTSVI  +
Sbjct:  308 IGQAGFVMIGLVVGTEAGYASLIFYLLVYLVMNLGAFLCITLFSLKTGTDEINEYSGLYQKDPFLTLCLSICLLSLGGLPPLAGFFGKLYLFWAGWQAGAYTLVLVGLVTSVISIY 423          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_PROMM (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+    L + +P+  +  SL + S  GIPP+ GF  K YLFFA      Y L  VG+VTSV+  +
Sbjct:  323 IGQAGFVMIGLVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDRISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVVGLVTSVVSIY 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_PROM3 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+    L + +P+  +  SL + S  GIPP+ GF  K YLFFA      Y L  VG+VTSV+  +
Sbjct:  323 IGQAGFVMIGLVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDRISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVVGLVTSVVSIY 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_ACAM1 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Acaryochloris marina (strain MBIC 11017) GN=ndhB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.502e-13
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G   GT  G  S++  + IY  M + AF  ++L   +T    I     L   +P+  +  SL + S  GIPPLAGF  K YLF+A    GAY L  +G++TSV+  +
Sbjct:  310 IGQAGFVMIGLVIGTEAGYASMVFYLLIYLFMNLGAFTCVILFSLRTGTDEIGDYAGLYLKDPLLTLALSLCLLSLGGIPPLAGFFGKLYLFWAGWQAGAYGLVLLGLITSVVSIY 425          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp. (strain WH8102) GN=ndhB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.798e-13
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G  CGT +G  ++++ +  Y  M + AFA I+L   +T    I+    L + +P+  +  SL + S  GIPP+ GF  K YLFFA      Y L  VG++TSV+  +
Sbjct:  323 IGQAGFVMIGMVCGTEDGFAAMVLYMAAYLFMNLGAFACIILFSIRTGSDRISDYAGLYQKDPLITLGLSLCLLSLGGIPPMLGFFGKIYLFFAGWADHQYLLVVVGLITSVVSIY 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_SPHAL (NADH-quinone oxidoreductase subunit N OS=Sphingopyxis alaskensis GN=nuoN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.671e-12
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I +  ++  G   GT +G+  +L  + +Y + T+ AF +VL LR     +V+ I  L  L++  P  A   S+ +FS AGIPPL GF  K+ +F AA+      LA  G+V SVIG +
Sbjct:  298 INNVGFMLIGLAAGTQQGVEGVLTYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLVPLAVAGIVASVIGAF 415          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Nephroselmis olivacea GN=ndhB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.671e-12
Identity = 43/116 (37.07%), Postives = 60/116 (51.72%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALR-QTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            +G A  +  G    + +G  SL++ + IY  M + AFA V+    +T    I     L   +P  A+  SL + S  GIPPLAGF  K YLF AA   G Y L  VG++TSV+  +
Sbjct:  317 VGQAGVMMIGMLTDSPDGYASLIVYLLIYLFMNLGAFACVILFGLRTGTDQIQDYSGLLARDPFLALCLSLCLLSLGGIPPLAGFFGKMYLFLAAWDAGQYSLVWVGLITSVVSIY 432          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_BEUC1 (NADH-quinone oxidoreductase subunit N OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=nuoN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.183e-12
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQ--------TRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAPDT 416
            + HA ++  G    + EGI S+   +  Y L TI AFA+V  +R+            ++A    L + +P+ A  F+L + S+AGIP  +GF  KF  F AA+  GA+ L  VGV+ S    +   R+  +  F  P     AP T
Sbjct:  344 VAHAGFLLVGVVAMSPEGISSVFFYLLAYGLATIGAFALVALVRERDAEGNVTAEASHLAQWAGLGRRSPVVATVFALYLLSFAGIPLTSGFVGKFVAFAAAIDGGAWPLVVVGVLASAAAAFFYVRIIVLMFFTSPAEEAGAPST 489          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON3_STRGG (NADH-quinone oxidoreductase subunit N 3 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=nuoN3 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.851e-12
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQ-----TRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKA 395
            I HA +I  G    + EGI S+L  +  Y+ +T+ AFA+V  +R      T +   AGLG   + +P+ A  F++ + ++AGIP  +GF  KF +F AA   GA  L  VGV++S +  +   R+  +  F  PKA
Sbjct:  377 IAHAGFILAGVIAASPEGISSVLFYLLAYSFVTVGAFAVVTLVRDAGGEATHLSKWAGLG---RRSPLVAAVFAVFLLAFAGIPLTSGFSGKFAVFKAAAEGGAGALVVVGVLSSAVAAFFYIRVIVLMFFSEPKA 509          
The following BLAST results are available for this feature:
BLAST of DY260235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NU2C_SYNPW7.502e-1337.07NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NU2C_SYNJB7.502e-1337.93NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NU2C_PROMM7.502e-1336.21NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C_PROM37.502e-1336.21NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C_ACAM17.502e-1336.21NAD(P)H-quinone oxidoreductase subunit 2 OS=Acaryo... [more]
NU2C_SYNPX9.798e-1335.34NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NUON_SPHAL1.671e-1236.44NADH-quinone oxidoreductase subunit N OS=Sphingopy... [more]
NU2C_NEPOL1.671e-1237.07NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NUON_BEUC12.183e-1232.19NADH-quinone oxidoreductase subunit N OS=Beutenber... [more]
NUON3_STRGG2.851e-1235.29NADH-quinone oxidoreductase subunit N 3 OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260235 ID=DY260235; Name=DY260235; organism=Citrus clementina; type=EST; length=1038bp
CAATTGGACATGCTTGTTATATTCCTACTGGTTTCCCATGTGGAACCATA
GAAGGAATTCCATCCCTACTAATTGGTATCTTTATTTATGCCTTAATGAC
GATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAAT
ATATAGCGGGTTTGGGCCCCCTAGCCAAAACGAATCCTATTTCGGCTATT
ACCTTCTCCCTTACTATGTTCTCATACGCGGGAATACCCCCGTTAGCCGG
CTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTT
ACTTCCTAGCCTCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCG
GCCGGAAGGTTGCCACGAGTAAGTCAGTTTGGGGGACCGAAGGCAGTTCT
CCGTGCACCGGACACGTAGTTTACCCAATCAGTTGCGACACGGATGGGAA
TGCATGCTACGAAAGATAGGGTAGAGTCTGATACATCAACCGTCTACTCA
ATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGG
TGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCG
ATCGTATACTGAGGTGCTCCCCGCCCATTGTTGAAACCACCCAAGCCGGG
CCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCCCCAAGTCTAAATA
GGGGGTTACAAACCCCCCATCCCATTGGGGGCCGAAAACCAATCCACCTC
TCGATGTGAGACAGCCTTTTCCATTTTATTTGGGAAAGAACGGCCAAGTC
CCTCCCAACCCCCCAATGAAAAATAAAAGGAAAACCCAAGCCCCCAAGGG
CCCCCCAACCCCCAGCCGAAACCGGCCCCGAAAAAAAATAATGGTGGAGG
AAAAACCCCCCCACCCCCTTCCCCTCCCCTCCCGGGGCCCAACCCTGCCC
TCCTTTCCCCGGCCCAATCCAAGGATTGGGGCCCTCCTCCCCCCCCCCAC
CCCACACTACCCATTCCAAAAAAATCCCTTTTTGGAAT
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