DY260235

Overview
NameDY260235
Unique NameDY260235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_SALRD (NADH-quinone oxidoreductase subunit N OS=Salinibacter ruber (strain DSM 13855) GN=nuoN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.152e-11
Identity = 37/119 (31.09%), Postives = 59/119 (49.58%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLAL----RQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I HA Y+  G   GT  G    L  + +YA+M I AF ++  L    ++ R + ++ L  +A   P+   T  + M S  G PPL GF  K+ +F  A+  G  +L  +GV+ S +  +
Sbjct:  308 IAHAGYLLVGLSAGTSAGYAGALFYLLVYAVMNIGAFGVMSMLEWDGKEGREQTLSSLAGIANDRPVLGSTMGVFMLSLIGFPPLGGFIGKYLVFAPAVDAGLTWLVVIGVLMSALSAY 426          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_CLOB8 (NADH-quinone oxidoreductase subunit N OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=nuoN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.152e-11
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLAL-RQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFG 383
            I  A Y   G    +  GI S+L+    Y    + AF +V+A+ + T    I     LAK +P  A    +++ S AGIPPLAGF  KFYLF + +  G  +LA + +  SVI  +   ++ +V  FG
Sbjct:  296 ISQAGYFLLGIIANSSLGIASILLYSLFYLFANMGAFGVVIAVSKATGNDQIKDYAYLAKRSPFLAAVMLISLLSLAGIPPLAGFIGKFYLFLSIIEKGQIWLAFLSIGMSVISVYYYLKVVKVMYFG 423          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON2_ACIC5 (NADH-quinone oxidoreductase subunit N 2 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.152e-11
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAAL----GCGAYFLASVGVVTSVI 338
            IGHA Y+  G    T + + +LL  +F YAL  + AF ++  L    +  ++ L  L++ +P  +    + + S AGIPPL GF +KF+LF AAL      G  +L  + ++ SV+
Sbjct:  323 IGHAGYLLLGLIAHTPQSLAALLYYVFTYALAVLGAFGVLAILETNGIDSLSSLAGLSRRSPALSACLLVFLLSLAGIPPLVGFFAKFWLFAAALQAAPAFGLLWLVILAILMSVV 438          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.152e-11
Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G   GT +G+ + ++ +  Y  M + AF+ ++L   +T    I+    L + +P+  +  SL + S  G+PP+ GF  K YLFFA      Y L  VG+VTSVI  +
Sbjct:  308 IGQAGFVMIGIVSGTQDGLSAAVLYLAAYLFMNLGAFSCVILFSLRTGSDRISDYSGLYQKDPLITLGLSLCLLSLGGLPPMLGFFGKIYLFFAGWANHQYLLVVVGLVTSVISIY 423          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_CYAA5 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanothece sp. (strain ATCC 51142) GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.152e-11
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IG A ++  G   GT  G  S++  + +Y  M + AF+ ++L   +T    I+    L + +P+  +  SL + S  GIPPLAGF  K YLF+A      Y L  + +VTSV+  +
Sbjct:  313 IGQAGFVMIGLTAGTDAGYSSMVFYLLVYLFMNLGAFSGVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAELYGLVLLALVTSVVSIY 428          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_MAGSM (NADH-quinone oxidoreductase subunit N OS=Magnetococcus sp. (strain MC-1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRV-KYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            IGH  Y   G   G   G  ++L+ + IY  M + AF ++L L +      I     L+   P  A+  ++ MFS AGIPPLAGF +K  +F AA+    Y +A +GV+ S +  +
Sbjct:  309 IGHVGYALIGLAVGNQMGYEAVLVYLTIYIFMNVGAFGLILVLNKEGFGDQIEDYKGLSAKRPGLALLMAIFMFSMAGIPPLAGFMAKLQIFMAAIDAHMYTVAILGVLFSAVSAF 424          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_ERYLH (NADH-quinone oxidoreductase subunit N OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I +  +I  G    T+ G+ ++L  + IY +M + +F  +L L+    T ++    +  L+ T P  A      MFS AGIPPL GF  KF +F AA+      LA++G+  SVIG +
Sbjct:  307 INNVGFILIGLAASTVAGLSAMLTYLAIYVVMALGSFVALLMLKDEDGTPLETFDDIAGLSTTRPALAWCLLFLMFSLAGIPPLLGFWGKFVVFQAAVQADMVLLAALGIAASVIGAF 424          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Zygnema circumcarinatum GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALR-QTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I  A Y+  G  CG I G   ++  +  Y  M + AF  V+    +T    I     L   +P+ A   S+ + S AGIPPLAGF  K YLF+     G Y L  V ++TSVI  +
Sbjct:  308 ISQAGYLIIGIVCGNIYGYTGMITYMVTYIFMNLGAFGCVILFGLRTGTDQIRDYTGLYLKDPLLAFCLSVCLLSLAGIPPLAGFFGKLYLFWCGWKSGLYLLVYVALITSVISMY 423          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_SYNP6 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I  A ++  G   GT  G  S++  + IY  M +  FA ++L   +T    I+    L + +P+  +  SL + S  GIPPLAGF  K YLF+A    G Y L  + ++TSVI  +
Sbjct:  309 IAQAGFVMIGLIAGTEAGYSSMVYYLLIYLFMNLGGFACVILFSLRTGTDQISEYAGLYQKDPLVTLGLSLCLLSLGGIPPLAGFFGKLYLFWAGWQAGLYGLVLLALITSVISIY 424          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2C_SYNE7 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.117e-11
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCW 347
            I  A ++  G   GT  G  S++  + IY  M +  FA ++L   +T    I+    L + +P+  +  SL + S  GIPPLAGF  K YLF+A    G Y L  + ++TSVI  +
Sbjct:  309 IAQAGFVMIGLIAGTEAGYSSMVYYLLIYLFMNLGGFACVILFSLRTGTDQISEYAGLYQKDPLVTLGLSLCLLSLGGIPPLAGFFGKLYLFWAGWQAGLYGLVLLALITSVISIY 424          
The following BLAST results are available for this feature:
BLAST of DY260235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NUON_SALRD3.152e-1131.09NADH-quinone oxidoreductase subunit N OS=Salinibac... [more]
NUON_CLOB83.152e-1134.38NADH-quinone oxidoreductase subunit N OS=Clostridi... [more]
NUON2_ACIC53.152e-1133.62NADH-quinone oxidoreductase subunit N 2 OS=Acidoba... [more]
NU2C_PROM53.152e-1133.62NAD(P)H-quinone oxidoreductase subunit 2 OS=Prochl... [more]
NU2C_CYAA53.152e-1133.62NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanot... [more]
NUON_MAGSM4.117e-1134.48NADH-quinone oxidoreductase subunit N OS=Magnetoco... [more]
NUON_ERYLH4.117e-1133.90NADH-quinone oxidoreductase subunit N OS=Erythroba... [more]
NU2C_ZYGCR4.117e-1135.34NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_SYNP64.117e-1134.48NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]
NU2C_SYNE74.117e-1134.48NAD(P)H-quinone oxidoreductase subunit 2 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260235 ID=DY260235; Name=DY260235; organism=Citrus clementina; type=EST; length=1038bp
CAATTGGACATGCTTGTTATATTCCTACTGGTTTCCCATGTGGAACCATA
GAAGGAATTCCATCCCTACTAATTGGTATCTTTATTTATGCCTTAATGAC
GATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAAT
ATATAGCGGGTTTGGGCCCCCTAGCCAAAACGAATCCTATTTCGGCTATT
ACCTTCTCCCTTACTATGTTCTCATACGCGGGAATACCCCCGTTAGCCGG
CTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTT
ACTTCCTAGCCTCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCG
GCCGGAAGGTTGCCACGAGTAAGTCAGTTTGGGGGACCGAAGGCAGTTCT
CCGTGCACCGGACACGTAGTTTACCCAATCAGTTGCGACACGGATGGGAA
TGCATGCTACGAAAGATAGGGTAGAGTCTGATACATCAACCGTCTACTCA
ATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGG
TGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCG
ATCGTATACTGAGGTGCTCCCCGCCCATTGTTGAAACCACCCAAGCCGGG
CCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCCCCAAGTCTAAATA
GGGGGTTACAAACCCCCCATCCCATTGGGGGCCGAAAACCAATCCACCTC
TCGATGTGAGACAGCCTTTTCCATTTTATTTGGGAAAGAACGGCCAAGTC
CCTCCCAACCCCCCAATGAAAAATAAAAGGAAAACCCAAGCCCCCAAGGG
CCCCCCAACCCCCAGCCGAAACCGGCCCCGAAAAAAAATAATGGTGGAGG
AAAAACCCCCCCACCCCCTTCCCCTCCCCTCCCGGGGCCCAACCCTGCCC
TCCTTTCCCCGGCCCAATCCAAGGATTGGGGCCCTCCTCCCCCCCCCCAC
CCCACACTACCCATTCCAAAAAAATCCCTTTTTGGAAT
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