DY260240

Overview
NameDY260240
Unique NameDY260240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1123
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260240_ssr614 microsatellite DY260240_ssr614:614..625. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1458 contig Ccv1_Contig1458:1..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_BRUSU (Inorganic pyrophosphatase OS=Brucella suis GN=ppa PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.529e-14
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA----VEAIQYPNG 348
            P NY F+P TL ED DP+DVL+    P++PGC +  + IG++ M D   KD+KIIAV +      Y+  +D  ++P   L +I  FFE Y+     K V + ++     A    VEAI+   G
Sbjct:   53 PGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAKG 175          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_BRUME (Inorganic pyrophosphatase OS=Brucella melitensis GN=ppa PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.529e-14
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA----VEAIQYPNG 348
            P NY F+P TL ED DP+DVL+    P++PGC +  + IG++ M D   KD+KIIAV +      Y+  +D  ++P   L +I  FFE Y+     K V + ++     A    VEAI+   G
Sbjct:   53 PGNYGFVPHTLSEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERAKG 175          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_NEIMB (Inorganic pyrophosphatase OS=Neisseria meningitidis serogroup B GN=ppa PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.997e-14
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKH-YNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEA 330
            P NY FIP+TL ED D +DVL++ ++P+  G FL A+ IG+M  +D GE DDKI+ V ADD    + Y  + +LP   + +I   F  Y+  D K+    +      A EA
Sbjct:   54 PTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGEVDDKIVCVPADDRNNGNAYKTLSDLPQQLIKQIEFHFNHYK--DLKKAGTTKVESWGDAEEA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_MYCPN (Inorganic pyrophosphatase OS=Mycoplasma pneumoniae GN=ppa PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.997e-14
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAV 294
            P NY FI  TL  D D +D  I   +  LPG  +  + +G + M+D GE D K++ V   DP YK  N + +LP HR+ EI  F + Y+    KEV +
Sbjct:   42 PQNYGFIANTLDWDGDELDCFIFADQAFLPGVVVPTRIVGALEMVDDGELDTKLLGVIDCDPRYKEINSVNDLPKHRVDEIIGFLKTYKLLQKKEVII 139          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_NEIMA (Inorganic pyrophosphatase OS=Neisseria meningitidis serogroup A GN=ppa PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKH-YNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEA 330
            P NY FIP+TL ED D +DVL++ ++P+  G FL A+ IG+M  +D GE DDKI+ V ADD    + Y  + +LP   + +I   F  Y+  D K+    +      A EA
Sbjct:   54 PTNYGFIPQTLDEDGDELDVLLVTEQPLATGVFLEARVIGVMKFVDDGEVDDKIVCVPADDRNNGNAYKTLADLPQQLIKQIEFHFNHYK--DLKKAGTTKVESWGDAEEA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_AGRT5 (Inorganic pyrophosphatase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ppa PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.609e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY F+P TL +D DP+DVLI    P++PGC +  + IG+M M D G KD+KI+AV A      Y   ++  +LP   L +I  FFE Y+
Sbjct:   53 PGNYGFVPHTLSDDGDPIDVLICNTRPLVPGCVINVRPIGVMIMEDDGGKDEKILAVPAPKLTQRYDKVHNYTDLPEITLKQIEHFFEHYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_MYCGE (Inorganic pyrophosphatase OS=Mycoplasma genitalium GN=ppa PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.407e-14
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAV 294
            P NY FI  TL  D D +D  I   +P LP   +  + +G + MID GE D K++ V   DP YK  N I +LP HR+ EI  F + Y+    K V +
Sbjct:   42 PQNYGFIKNTLDWDGDELDCFIFADQPFLPATVVPTRIVGALEMIDDGEIDTKLLGVIDCDPRYKEINQISDLPKHRIEEILIFLKTYKLLQKKTVII 139          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_HELPY (Inorganic pyrophosphatase OS=Helicobacter pylori GN=ppa PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.450e-14
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAAVEAIQ 336
            P NY F+P TL  D DP+D L+L       G  ++A+ +G++ M D+   D+K+IA+  D  DP + +  DI +L  H L +I+ FFE Y+    NK V V  F    +A++ ++
Sbjct:   51 PANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLE 165          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR1_PSESM (Inorganic pyrophosphatase 1 OS=Pseudomonas syringae pv. tomato GN=ppa1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.450e-14
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKE---LPPHRLSEIRRFFEDYQ 267
            P NY FIP TL +D DP+DVL++   PV PG  +RA+ +G++ M D G  D K+IAV   D   + Y D+KE   LP   L +I+ FFE+Y+
Sbjct:   53 PANYGFIPNTLADDGDPLDVLVVTPYPVTPGSVIRARPVGILHMTDDGGGDAKVIAV-PHDKLSQLYVDVKEYTDLPALLLEQIKHFFENYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_SULTO (Inorganic pyrophosphatase OS=Sulfolobus tokodaii GN=ppa PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.590e-14
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK 270
            P NY FIP TL ED DP+DVL++   P+LPG  +  + IG++ M D+  +D KIIAV  D  DP + +  DI +LP     +I  FFE Y++
Sbjct:   49 PFNYGFIPGTLEEDGDPLDVLVISNYPLLPGTAIEVRPIGILYMRDEEGEDAKIIAVPKDKVDPTFSNIKDIIDLPQAIKDKINHFFEHYKE 140          
The following BLAST results are available for this feature:
BLAST of DY260240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
IPYR_BRUSU1.529e-1437.40Inorganic pyrophosphatase OS=Brucella suis GN=ppa ... [more]
IPYR_BRUME1.529e-1437.40Inorganic pyrophosphatase OS=Brucella melitensis G... [more]
IPYR_NEIMB1.997e-1439.64Inorganic pyrophosphatase OS=Neisseria meningitidi... [more]
IPYR_MYCPN1.997e-1438.78Inorganic pyrophosphatase OS=Mycoplasma pneumoniae... [more]
IPYR_NEIMA2.609e-1439.64Inorganic pyrophosphatase OS=Neisseria meningitidi... [more]
IPYR_AGRT52.609e-1443.96Inorganic pyrophosphatase OS=Agrobacterium tumefac... [more]
IPYR_MYCGE3.407e-1439.80Inorganic pyrophosphatase OS=Mycoplasma genitalium... [more]
IPYR_HELPY4.450e-1435.65Inorganic pyrophosphatase OS=Helicobacter pylori G... [more]
IPYR1_PSESM4.450e-1445.65Inorganic pyrophosphatase 1 OS=Pseudomonas syringa... [more]
IPYR_SULTO7.590e-1444.57Inorganic pyrophosphatase OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260240 ID=DY260240; Name=DY260240; organism=Citrus clementina; type=EST; length=1123bp
CCTCATAACTATTTTTTCATCCCTCGCACATTATGTGAAGATAATGATCC
AATGGATGTTTTGATTCTTATGCAGGAGCCAGTCCTTCCCGGATGTTTCC
TGCGGGCCAAGGCTATTGGATTAATGCCCATGATTGATCAGGGAGAAAAA
GATGATAAGATCATTGCAGTTTGTGCCGATGATCCAGAGTATAAGCACTA
CAATGACATCAAAGAGCTTCCCCCTCATCGCCTTTCCGAGATCCGTCGTT
TCTTTGAAGATTACCAGAAAAATGACAACAAGGAGGTAGCAGTTAATGAA
TTTTCACCTTCTTCTGCTGCTGTTGAAGCCATCCAGTACCCCAATGGATC
TTTATGCCCCAGTACATTCTGCACACCCTGAGGCGGTAGGCCCTTCCCTT
CTTTTTTCCCTTGCCCCCCCCCCCTCGATAATCCAGGGCAACACCGTCAA
TTTGAATAAGTTATCTTCCCCAATGTATTTTGAAGGTTAGATAAACCTCA
TGCTTCCCCATTTTGATACTTTTGATGATAATTCTTGCCCTGCCCTTTTG
AACATTTTCCCGAACCAAATGCCCCAACGAATGGTCCCTCCCTCCGCACA
TCCCAACACAACAAAACAAACAAACCCACTTTCCTGTCACAAATTTGTCT
TACAACACACCCCCTCCCCACACCTCCCCCCCCCCCACACCGCCCCTACC
CCCCAAATCAAATCCATTCCTCCCACCCCGCCCGAGCCCCCCATACGGAA
TCCACACCACCTCGTTCTACCCCCCCACCCGCCCCCCCTCCCCCCCTGCC
CCCACCCCCCCCTCGCTCCCCCTCCACCGAAACACAATACTCCCCTCACC
CTACACAAACCCTCCCCAGACGCCACCATACACACGCCCACTTCCTCCCC
GCCCCGGCTCCACCCACCCCCGTTTCTTCAACGGCTCCCCCCTCCCCCAC
CGCACACGCGACCACACCCCCCTCACCCCCCCCCCTCCCACCCCCCACCT
TCCCTCCGCTACCGTTCCCCTCCCCCCCCCCCCCCTCTCCCACTCTCATC
CCCCAACTCCTCATCCCTCTTCTCCCTCTCCCCCCCTTCAACATACACGT
TCTCTTTTCTCCACTCCCCTCCC
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