DY260240

Overview
NameDY260240
Unique NameDY260240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1123
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260240_ssr614 microsatellite DY260240_ssr614:614..625. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1458 contig Ccv1_Contig1458:1..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_PSEPK (Inorganic pyrophosphatase OS=Pseudomonas putida (strain KT2440) GN=ppa PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKE---LPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAAVEAI 333
            P NY FIP TL +D DP+DVL++   PV PG  +RA+ +G++ M D G  D K+IAV   D   + Y D+KE   LP   + +I  FF +Y+     K V +  +  + AA  AI
Sbjct:   53 PANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLNMTDDGGGDAKVIAV-PHDKLSQLYVDVKEYTDLPALLIQQIEHFFANYKDLEKGKWVKIEGWEGADAARAAI 166          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_PSEAO (Inorganic pyrophosphatase OS=Pseudanabaena sp. (strain PCC 6903) GN=ppa PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 PHNYFFIPRT--LCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P++Y F+P T  L +D DP+D +++M  P  PG    A+ IG++ M+D G++D+K + V A DP Y +     +L  HRL EI  FF  Y+
Sbjct:   51 PYDYGFVPITNNLADDGDPLDGMVIMVPPTFPGV-ATARPIGMLQMVDGGDRDEKFLCVPAKDPRYTYVKSANDLAGHRLDEIFEFFRSYK 140          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_COREF (Inorganic pyrophosphatase OS=Corynebacterium efficiens GN=ppa PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P +Y FI  TL ED DPMD L+++ E V P   ++++ IG+  M D+   DDK++AV  DDP Y H  DI ++      EI  FF  Y+
Sbjct:   39 PLDYGFIDHTLGEDGDPMDALVILPESVFPNVIVKSRVIGVFKMTDEAGGDDKLLAV-LDDPRYDHIQDISDVSDFLKDEIEHFFVHYK 126          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_BARBK (Inorganic pyrophosphatase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ppa PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY FIP TL ED+DP+DVL+    P++PGC +  + IG + M D G KD+KIIAV       +Y   +D  +L  + L +I  FF+ Y+
Sbjct:   53 PGNYGFIPHTLSEDSDPIDVLVCNTRPLIPGCVINVRPIGALIMEDDGGKDEKIIAVPTPKLTQQYIGIHDYTDLTENILKKIEHFFKHYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR2_PSESM (Inorganic pyrophosphatase 2 OS=Pseudomonas syringae pv. tomato GN=ppa2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.884e-13
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAAVEAIQ 336
            P NY FIP TL +D DP+DVL++   PV PG  +R++ +G+M M D+   D K+IAV  +     Y +  +  +LP   L++I+ FFE+Y+     K V +  +  +  A E I+
Sbjct:   53 PANYGFIPNTLSDDGDPLDVLVICPYPVSPGVVIRSRPVGVMYMTDEAGADAKVIAVPHEKLSSMYSNVKECSDLPALLLAQIQHFFENYKALEPGKWVKMGRWGSADEAREDIR 167          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_RALSO (Inorganic pyrophosphatase OS=Ralstonia solanacearum GN=ppa PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.767e-13
Identity = 34/91 (37.36%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY FIP+TL  D DP+DVL++   P++ GC +R + +G++ M D+  +D K++AV  +   P   H  D+ ++  + L +I+ FFE Y+
Sbjct:   53 PANYGFIPQTLAGDGDPVDVLVVTPFPLVHGCVVRCRTLGMLKMTDESGQDAKLVAVPVNKLSPATAHMTDLSDIGQNLLDQIKHFFEQYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_CAUCR (Inorganic pyrophosphatase OS=Caulobacter crescentus GN=ppa PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.431e-12
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY FIP TL +D DP D++++   PV+PG  +R + IG + M+D+   D+KI+AV  D   P Y      ++LP     +I  FF+ Y+
Sbjct:   53 PANYGFIPHTLADDGDPADIMVVGPTPVVPGAIIRCRPIGTLMMVDEAGSDEKILAVPVDKLHPFYTGVTSWRDLPTILTEQIAHFFQHYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_CORGL (Inorganic pyrophosphatase OS=Corynebacterium glutamicum GN=ppa PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.439e-12
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P +Y +I  TL ED DP+D L+++ E V P   ++++ IG+  M D+   DDK+++V  DDP Y H  DI ++      EI  FF  Y+
Sbjct:   39 PLDYGYIDHTLGEDGDPLDALVILPESVFPAVVVKSRIIGVFKMTDEAGGDDKLLSV-LDDPRYDHIQDISDVSDFLKDEIEHFFVHYK 126          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_MYCPU (Inorganic pyrophosphatase OS=Mycoplasma pulmonis GN=ppa PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVA-VNEFSPSSAAVEAIQ 336
            P NY ++   L  D D +DVL+  QE  LPG  L A+ +G M MID GE D K+IAV  DD   ++   +++L    L EI+ FF +Y+      +  V+ F  +S A++  Q
Sbjct:   40 PANYGYLEDALDWDGDELDVLVYSQEKFLPGTSLNARIVGAMKMIDDGETDTKLIAVHDDDYRLENIKALEDLDSKWLEEIKYFFSNYKNWKRPGITKVSGFENTSWALKEYQ 152          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_GLUOX (Inorganic pyrophosphatase OS=Gluconobacter oxydans GN=ppa PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 7.104e-12
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAAVEAI 333
            P  Y FIP TL  D DP D L+L    V+PG  +RA+ IG++ M D+  +D+KII V  D   P++ + + + +LP      I  FFE Y+    NK V V  ++  + A + I
Sbjct:   52 PAAYGFIPGTLAADGDPADALVLTPAAVVPGSVIRARPIGMLKMEDESGQDEKIICVPHDKVHPQFSNVHSVDDLPEITKKAITHFFERYKDLEPNKWVKVTGWADKAEAGKVI 165          
The following BLAST results are available for this feature:
BLAST of DY260240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
IPYR_PSEPK2.884e-1340.00Inorganic pyrophosphatase OS=Pseudomonas putida (s... [more]
IPYR_PSEAO2.884e-1339.56Inorganic pyrophosphatase OS=Pseudanabaena sp. (st... [more]
IPYR_COREF2.884e-1341.57Inorganic pyrophosphatase OS=Corynebacterium effic... [more]
IPYR_BARBK2.884e-1342.86Inorganic pyrophosphatase OS=Bartonella bacillifor... [more]
IPYR2_PSESM2.884e-1336.52Inorganic pyrophosphatase 2 OS=Pseudomonas syringa... [more]
IPYR_RALSO3.767e-1337.36Inorganic pyrophosphatase OS=Ralstonia solanacearu... [more]
IPYR_CAUCR1.431e-1238.46Inorganic pyrophosphatase OS=Caulobacter crescentu... [more]
IPYR_CORGL5.439e-1238.20Inorganic pyrophosphatase OS=Corynebacterium gluta... [more]
IPYR_MYCPU7.104e-1237.17Inorganic pyrophosphatase OS=Mycoplasma pulmonis G... [more]
IPYR_GLUOX7.104e-1236.84Inorganic pyrophosphatase OS=Gluconobacter oxydans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260240 ID=DY260240; Name=DY260240; organism=Citrus clementina; type=EST; length=1123bp
CCTCATAACTATTTTTTCATCCCTCGCACATTATGTGAAGATAATGATCC
AATGGATGTTTTGATTCTTATGCAGGAGCCAGTCCTTCCCGGATGTTTCC
TGCGGGCCAAGGCTATTGGATTAATGCCCATGATTGATCAGGGAGAAAAA
GATGATAAGATCATTGCAGTTTGTGCCGATGATCCAGAGTATAAGCACTA
CAATGACATCAAAGAGCTTCCCCCTCATCGCCTTTCCGAGATCCGTCGTT
TCTTTGAAGATTACCAGAAAAATGACAACAAGGAGGTAGCAGTTAATGAA
TTTTCACCTTCTTCTGCTGCTGTTGAAGCCATCCAGTACCCCAATGGATC
TTTATGCCCCAGTACATTCTGCACACCCTGAGGCGGTAGGCCCTTCCCTT
CTTTTTTCCCTTGCCCCCCCCCCCTCGATAATCCAGGGCAACACCGTCAA
TTTGAATAAGTTATCTTCCCCAATGTATTTTGAAGGTTAGATAAACCTCA
TGCTTCCCCATTTTGATACTTTTGATGATAATTCTTGCCCTGCCCTTTTG
AACATTTTCCCGAACCAAATGCCCCAACGAATGGTCCCTCCCTCCGCACA
TCCCAACACAACAAAACAAACAAACCCACTTTCCTGTCACAAATTTGTCT
TACAACACACCCCCTCCCCACACCTCCCCCCCCCCCACACCGCCCCTACC
CCCCAAATCAAATCCATTCCTCCCACCCCGCCCGAGCCCCCCATACGGAA
TCCACACCACCTCGTTCTACCCCCCCACCCGCCCCCCCTCCCCCCCTGCC
CCCACCCCCCCCTCGCTCCCCCTCCACCGAAACACAATACTCCCCTCACC
CTACACAAACCCTCCCCAGACGCCACCATACACACGCCCACTTCCTCCCC
GCCCCGGCTCCACCCACCCCCGTTTCTTCAACGGCTCCCCCCTCCCCCAC
CGCACACGCGACCACACCCCCCTCACCCCCCCCCCTCCCACCCCCCACCT
TCCCTCCGCTACCGTTCCCCTCCCCCCCCCCCCCCTCTCCCACTCTCATC
CCCCAACTCCTCATCCCTCTTCTCCCTCTCCCCCCCTTCAACATACACGT
TCTCTTTTCTCCACTCCCCTCCC
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