DY260240

Overview
NameDY260240
Unique NameDY260240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1123
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260240_ssr614 microsatellite DY260240_ssr614:614..625. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1458 contig Ccv1_Contig1458:1..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_VIBPA (Inorganic pyrophosphatase OS=Vibrio parahaemolyticus GN=ppa PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.067e-11
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY ++  TL  D DP+DVL+    P++PG  +R + +G++ M D+  +D K++AV       EY+H  D+ ++P    ++I  FFE Y++    K V V+ ++   AA
Sbjct:   53 PCNYGYVNNTLSLDGDPVDVLVPTPYPLMPGSVIRCRPVGVLKMTDESGEDAKVVAVPHSKISKEYEHIQDVGDIPELLKAQITHFFERYKELESGKWVKVDGWADVEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_RICBR (Inorganic pyrophosphatase OS=Rickettsia bellii (strain RML369-C) GN=ppa PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.526e-11
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY FIP TL  D DP+DVL++   PV+PG  ++ +A+G++ M D+   D+KIIAV     D  + H  ++ ++       I  FFE Y+
Sbjct:   52 PCNYGFIPHTLSNDGDPVDVLVVSHHPVVPGSVIKCRAVGVLMMEDESGFDEKIIAVPTSKLDITFDHIKELDDVCEMLKKRIVHFFEHYK 142          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_PASMU (Inorganic pyrophosphatase OS=Pasteurella multocida GN=ppa PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.526e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQKND-NKEVAVNEFSPSSAAVEAI 333
            P NY ++  TL  D DP+DVL+    P+ PG  +R + +G++ M D+   D K++AV       EY H  D+ +LP    ++I+ FFE Y+  +  K V V+ +    AA + I
Sbjct:   53 PANYGYVNNTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGSDAKVVAVPHSKLTKEYDHIKDVNDLPALLKAQIQHFFESYKALEAGKWVKVDGWEGVDAARQEI 166          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_SALTY (Inorganic pyrophosphatase OS=Salmonella typhimurium GN=ppa PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.605e-11
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY +I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    ++I  FFE Y+     K V V+ +  + AA
Sbjct:   53 PCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLEKGKWVKVDGWDNAEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_SALTI (Inorganic pyrophosphatase OS=Salmonella typhi GN=ppa PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.605e-11
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY +I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    ++I  FFE Y+     K V V+ +  + AA
Sbjct:   53 PCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGEDAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLEKGKWVKVDGWDNAEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_HAEDU (Inorganic pyrophosphatase OS=Haemophilus ducreyi GN=ppa PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.605e-11
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYKHYNDIKELPPHRLSEIRRFFEDYQ 267
            P NY ++  TL  D DP+DVL+    P+ PG  +R + +G++ M D+   D K++AV       EY H  D+ +LP    ++I+ FFE Y+
Sbjct:   53 PANYGYVNHTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGGDAKVVAVPHTKLTKEYDHIKDVNDLPALLKAQIQHFFESYK 143          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_ECOLI (Inorganic pyrophosphatase OS=Escherichia coli (strain K12) GN=ppa PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.014e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY +I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    ++I  FFE Y+     K V V  +  + AA
Sbjct:   53 PCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_ECOL6 (Inorganic pyrophosphatase OS=Escherichia coli O6 GN=ppa PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 6.014e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAV--CADDPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY +I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K+IAV       EY H  D+ +LP    ++I  FFE Y+     K V V  +  + AA
Sbjct:   53 PCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLIAVPHTKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_ECO57 (Inorganic pyrophosphatase OS=Escherichia coli O157:H7 GN=ppa PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.014e-11
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCAD--DPEYKHYNDIKELPPHRLSEIRRFFEDYQK-NDNKEVAVNEFSPSSAA 321
            P NY +I  TL  D DP+DVL+    P+ PG  +R + +G++ M D+  +D K++AV       EY H  D+ +LP    ++I  FFE Y+     K V V  +  + AA
Sbjct:   53 PCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAEAA 162          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_BOVIN (Inorganic pyrophosphatase OS=Bos taurus GN=PPA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.854e-11
Identity = 46/129 (35.66%), Postives = 66/129 (51.16%), Query Frame = 1
Query:    7 NYFFIPRT------------LCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDI---KELPPHRLSEIRRFFEDYQKNDNK---EVAVN-EFSPSSAAVEAIQ 336
            NY  IP+T             C DNDP+DV  +  +    G  +R K +G++ MID+GE D K+IA+  +DP+  +YNDI   K L P  L     +F  Y+  D K   E A N EF   + A++ I+
Sbjct:   93 NYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVKVLGILAMIDEGETDWKVIAINVEDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPENEFAFNAEFKDKNFAIDIIE 221          
The following BLAST results are available for this feature:
BLAST of DY260240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
IPYR_VIBPA2.067e-1133.64Inorganic pyrophosphatase OS=Vibrio parahaemolytic... [more]
IPYR_RICBR3.526e-1138.46Inorganic pyrophosphatase OS=Rickettsia bellii (st... [more]
IPYR_PASMU3.526e-1134.21Inorganic pyrophosphatase OS=Pasteurella multocida... [more]
IPYR_SALTY4.605e-1135.45Inorganic pyrophosphatase OS=Salmonella typhimuriu... [more]
IPYR_SALTI4.605e-1135.45Inorganic pyrophosphatase OS=Salmonella typhi GN=p... [more]
IPYR_HAEDU4.605e-1136.26Inorganic pyrophosphatase OS=Haemophilus ducreyi G... [more]
IPYR_ECOLI6.014e-1135.45Inorganic pyrophosphatase OS=Escherichia coli (str... [more]
IPYR_ECOL66.014e-1136.36Inorganic pyrophosphatase OS=Escherichia coli O6 G... [more]
IPYR_ECO576.014e-1135.45Inorganic pyrophosphatase OS=Escherichia coli O157... [more]
IPYR_BOVIN7.854e-1135.66Inorganic pyrophosphatase OS=Bos taurus GN=PPA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260240 ID=DY260240; Name=DY260240; organism=Citrus clementina; type=EST; length=1123bp
CCTCATAACTATTTTTTCATCCCTCGCACATTATGTGAAGATAATGATCC
AATGGATGTTTTGATTCTTATGCAGGAGCCAGTCCTTCCCGGATGTTTCC
TGCGGGCCAAGGCTATTGGATTAATGCCCATGATTGATCAGGGAGAAAAA
GATGATAAGATCATTGCAGTTTGTGCCGATGATCCAGAGTATAAGCACTA
CAATGACATCAAAGAGCTTCCCCCTCATCGCCTTTCCGAGATCCGTCGTT
TCTTTGAAGATTACCAGAAAAATGACAACAAGGAGGTAGCAGTTAATGAA
TTTTCACCTTCTTCTGCTGCTGTTGAAGCCATCCAGTACCCCAATGGATC
TTTATGCCCCAGTACATTCTGCACACCCTGAGGCGGTAGGCCCTTCCCTT
CTTTTTTCCCTTGCCCCCCCCCCCTCGATAATCCAGGGCAACACCGTCAA
TTTGAATAAGTTATCTTCCCCAATGTATTTTGAAGGTTAGATAAACCTCA
TGCTTCCCCATTTTGATACTTTTGATGATAATTCTTGCCCTGCCCTTTTG
AACATTTTCCCGAACCAAATGCCCCAACGAATGGTCCCTCCCTCCGCACA
TCCCAACACAACAAAACAAACAAACCCACTTTCCTGTCACAAATTTGTCT
TACAACACACCCCCTCCCCACACCTCCCCCCCCCCCACACCGCCCCTACC
CCCCAAATCAAATCCATTCCTCCCACCCCGCCCGAGCCCCCCATACGGAA
TCCACACCACCTCGTTCTACCCCCCCACCCGCCCCCCCTCCCCCCCTGCC
CCCACCCCCCCCTCGCTCCCCCTCCACCGAAACACAATACTCCCCTCACC
CTACACAAACCCTCCCCAGACGCCACCATACACACGCCCACTTCCTCCCC
GCCCCGGCTCCACCCACCCCCGTTTCTTCAACGGCTCCCCCCTCCCCCAC
CGCACACGCGACCACACCCCCCTCACCCCCCCCCCTCCCACCCCCCACCT
TCCCTCCGCTACCGTTCCCCTCCCCCCCCCCCCCCTCTCCCACTCTCATC
CCCCAACTCCTCATCCCTCTTCTCCCTCTCCCCCCCTTCAACATACACGT
TCTCTTTTCTCCACTCCCCTCCC
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