DY260245

Overview
NameDY260245
Unique NameDY260245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1015
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1461 contig Ccv1_Contig1461:1..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.116e-12
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  245 LLFILLLCIT-INKSRAINSDGEALLSFRTAVVSS---DGFLNQWRPEDPDPCNWKGVKCDKNK--RVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNL 565
            LL + +LC + + +   IN+D + LL  + ++V++   D  L QW  ++ + C+W GV CD     RVI L+LT   L+G IS   G+ D L  L+L SNN  G IP+ L NL
Sbjct:    6 LLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTALSNL 118          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.713e-12
Identity = 42/126 (33.33%), Postives = 65/126 (51.59%), Query Frame = 2
Query:  245 LLFILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI-IPAEQLLERINS 619
            LLF   LC  ++     ++ G+AL + R ++ +    L+ W     +PC W  V CD    V +L+L++   SG +S+ +G L+ LK L L  N   GEIP + GNL  +  + +   QL  RI S
Sbjct:   15 LLFFACLCSFVSP----DAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPS 136          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.078e-11
Identity = 36/105 (34.29%), Postives = 51/105 (48.57%), Query Frame = 2
Query:  251 FILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPIS-ADLGKLDQLKFLNLHSNNFYGEIPSELGN 562
            F  LLC       +++  G+ALLS+++ +  S    + W   D  PCNW GVKC++   V  + L    L G +    L  L  L  L L S N  G IP E+G+
Sbjct:   11 FSSLLCFFFIPCFSLDQQGQALLSWKSQLNISGDAFSSWHVADTSPCNWVGVKCNRRGEVSEIQLKGMDLQGSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGD 115          

HSP 2 Score: 27.335 bits (59), Expect = 1.078e-11
Identity = 20/63 (31.75%), Postives = 25/63 (39.68%), Query Frame = 3
Query:  567 TELQGLSLQSNYLSGSIPXXXXXXXXXXXXXXXXXXXXDYIPPSLGKLQRLITFHVSHN-LSG 752
            TEL+ L L  N LSG IP                     +IP  +G L  L+   +  N LSG
Sbjct:  117 TELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSG 179          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.339e-11
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 2
Query:  245 LLFILLLCITINKSRAINSDGEALLSFRTAVVSSDG--FLNQWRPEDPDPCNWKGVKCDKNK-RVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGIIPAEQLLE 607
            L  +L +CI      +  +D +ALL F++ V  ++    L  W    P  CNW GV C + + RVI+L+L   KL+G IS  +G L  L+ LNL  N+F   IP ++G L R+  +  +  LLE
Sbjct:   12 LTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPF-CNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLE 134          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.012e-11
Identity = 41/125 (32.80%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  245 LLFILLL---CITINKSRAINSDGEALLSFRTAVVSSD-GFLNQWRPEDPDPCNWKGVKCDK--------NKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI 583
            LLF L+L        + +A+N+DG  LL+F+ ++++     L  W  +D  PC W GV C +          RV +L L N  L G I+ DL  +  L+ L+L SN F G +P  + N   +  I
Sbjct:    8 LLFSLVLFHFLFVPTQLQALNTDGVLLLTFKYSILTDPLSVLRNWNYDDATPCLWTGVTCTELGKPNTPDMFRVTSLVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSI 132          

HSP 2 Score: 27.7202 bits (60), Expect = 4.012e-11
Identity = 18/59 (30.51%), Postives = 24/59 (40.68%), Query Frame = 3
Query:  567 TELQGLSLQSNYLSGSIPXXXXXXXXXXXXXXXXXXXXDYIPPSLGKLQRLITFHVSHN 743
            TELQ +SL SN LSG +P                      IP ++  L+ L    +S N
Sbjct:  127 TELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKN 185          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.805e-11
Identity = 42/116 (36.21%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  254 ILLLCITINKSRAINSDGEALLSFRT-AVVSSDGFLNQWRPEDPDPCNWKGVKCDK-------NKRVIT-LSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRV 574
            + LL + +  S ++NSDG+ LL  +      S   L+ W   D  PCNW GV C         N  V+T L L++  LSG +S  +G L  L +LNL  N   G+IP E+GN  ++
Sbjct:   20 LFLLTLLVWTSESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKL 135          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 39/130 (30.00%), Postives = 64/130 (49.23%), Query Frame = 2
Query:  254 ILLLCITIN---KSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGIIPAEQLLERINSK*TGK 634
            +LLLC  +     S   N + EAL++ +  +    G    W     DPC+W  + C  +  VI L   +  LSG +S  +G L  L+ ++L +NN  G+IP E+ +L       P  Q L+  N++ +G+
Sbjct:   15 LLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSL-------PKLQTLDLSNNRFSGE 137          
The following BLAST results are available for this feature:
BLAST of DY260245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GSO1_ARATH2.116e-1238.94LRR receptor-like serine/threonine-protein kinase ... [more]
Y5129_ARATH4.713e-1233.33Probable LRR receptor-like serine/threonine-protei... [more]
Y4265_ARATH1.078e-1134.29Probable LRR receptor-like serine/threonine-protei... [more]
EFR_ARATH2.339e-1136.29LRR receptor-like serine/threonine-protein kinase ... [more]
RPKL_ARATH4.012e-1132.80Receptor protein kinase-like protein At4g34220 OS=... [more]
Y2317_ARATH6.805e-1136.21Probable leucine-rich repeat receptor-like protein... [more]
Y2239_ARATH8.888e-1130.00Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260245 ID=DY260245; Name=DY260245; organism=Citrus clementina; type=EST; length=1015bp
TTATTAGTAATCTTTTTTTTATCCCTTTACAACTAAGGGCTTGCGTTTCC
CTTCATAGATCAGAATCAGTAGGAATAAAAAGTTTTCTTTCCTCTGCAAT
TGCTAAATGTCATCATCAACTGAGTAACCATATGTTACACGGAAGCATTC
TGGAGCTTGCTGTATCAGATGATTTGTAGTAGCTATATTATGCTTGATGA
GTGCCACTATGGGCATGTATCAAATAAAATGTCGAGGGCAATGGCTTCTT
TTCATTCTACTGCTCTGTATCACAATAAACAAAAGCAGGGCCATCAATTC
TGATGGTGAGGCACTTCTAAGCTTCAGGACAGCGGTGGTTAGTTCAGATG
GTTTCCTTAATCAATGGAGACCAGAGGATCCTGACCCTTGTAACTGGAAA
GGAGTGAAATGTGATAAAAACAAGAGAGTAATAACTTTGAGCCTTACCAA
TCACAAATTGAGCGGACCAATATCAGCTGACCTTGGGAAGCTTGATCAGC
TAAAGTTTTTAAATCTTCATAGCAACAACTTTTATGGGGAAATTCCTTCG
GAATTGGGAAACCTGCACAGAGTTGCAGGGATTATCCCTGCAGAGCAATT
ACTTGAGCGGATCAATTCCAAGTGAACTGGGAAATCTATCGAATCTTCTG
AATCTGGATATTTCAAGCAACTCCCTCAGTGACTATATACCTCCCTCACT
TGGGAAATTACAAAGATTGATTACCTTCCATGTGTCCCACAACCTTTCTG
GTCCGAGCAATACCCTCTGATGGAGTGCTTACCAATTTTTCCGAAAGCCT
CCTCCTTGAAAATCGGGGTTTATGTGGGGAAGCCAATAAATGTAACAGGC
AAAATGAAAGTGGAAGATCCACAAAAAATCCCCATCCCCCAACTCACCCC
AAATCCAGGGTGAAAAAAAAAACCCGGGGAGGCCGGCTTAATAATGCCAC
CCCCACCGTGGGGGCCCCCTTCTCCGGGGGGCCCTTAAGGGGTTTCCTGG
GGTTCCCTTTCTTTA
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