DY260246

Overview
NameDY260246
Unique NameDY260246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig468 contig Ccv1_Contig468:30..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PR1_PHAVU (Pathogenesis-related protein 1 OS=Phaseolus vulgaris PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.751e-25
Identity = 60/156 (38.46%), Postives = 87/156 (55.77%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKAL-NDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNP 508
            MGV   E +  S VAP+ L+KA+  D     PK  P + KS++I++G+GG GTIK ++F + G  K    +I+++DE NL   Y+   G  + +  +K  +D K+ D  NGGS+ K     H+  D   NE   K  + K   LF+ VEAYLL NP
Sbjct:    1 MGVFTFEDQTTSPVAPATLYKAVAKDADTIFPKALPDSFKSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIESIDEANLGYSYSIVGGVALPETAEKITFDSKLSDGPNGGSLIKLSITYHSKGDAPPNEDELKAGKAKSDSLFKAVEAYLLANP 156          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1J_BETVE (Major pollen allergen Bet v 1-J OS=Betula verrucosa GN=BETV1J PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.862e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + D  N  PK+APQ I S++ ++G+GG GTIK ++F +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + NGGSI K   + H   D  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1C_BETVE (Major pollen allergen Bet v 1-C OS=Betula verrucosa GN=BETV1C PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.862e-24
Identity = 58/159 (36.48%), Postives = 91/159 (57.23%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + +    +PK+APQ I S++ ++G+GG GTIK + F +G  +K  K+R+D +D  N    Y+  EG  +    +K   ++KI+ + +GGSI K   + H   D+ +   H K  +EKG  L + VE+YLL + + Y
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDQEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1K_BETVE (Major pollen allergen Bet v 1-K OS=Betula verrucosa GN=BETV1K PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.175e-24
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + +    +PK+APQ I S++ ++G+GG GTIK + F +G  +K  K+R+D +D  N    Y+  EG  +    +K   ++KI+ + +GGSI K   + H   D  +   H K  +EKG  L + VE+YLL + + Y
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1F_BETVE (Major pollen allergen Bet v 1-F/I OS=Betula verrucosa GN=BETV1F PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.175e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + D  N  PK+APQ I S++ ++G+GG GTIK ++F +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + NGGSI K   + H   D  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYEIEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1A_BETVE (Major pollen allergen Bet v 1-A OS=Betula verrucosa GN=BETVIA PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 3.175e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + D  N  PK+APQ I S++ ++G+GG GTIK ++F +G  +K  K R+D +D  N    Y+  EG  I    +K   ++KI+ + +GGSI K   + H   D  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: ABR18_PEA (ABA-responsive protein ABR18 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.175e-24
Identity = 56/157 (35.67%), Postives = 91/157 (57.96%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKAL-NDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MGV   E +  S V P++LFKA+ +D    +PK+   +IK+++IL+G+GG GT+K L F +GG       +++A+D+      Y+   G GI  + +K  ++ K+ +  NGGS+ K + + H   D    E   +E + KG  LF+ +EAY+L NPN
Sbjct:    1 MGVFTYENDTTSTVPPAKLFKAVVHDADLIVPKVV-DSIKTVEILEGNGGPGTVKKLTFVEGGQTLYVLHKVEAIDDAKFEYNYSIVGGVGISDIVEKISFEAKLFEGPNGGSVGKMIVKYHTKGDAKPIEKEVEEGKAKGDALFKAIEAYVLANPN 156          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1E_BETVE (Major pollen allergen Bet v 1-E OS=Betula verrucosa GN=BETV1E PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.147e-24
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + D  N  PK+APQ I S++ ++G+GG GTIK ++F +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + NGGSI K   + H   D  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGIPFKYVKGRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1B_BETVE (Major pollen allergen Bet v 1-B OS=Betula verrucosa GN=BETV1B PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.147e-24
Identity = 58/159 (36.48%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + +    +PK+APQ I S++ ++G+GG GTIK + F +G  +K  K+R+D +D  N    Y+  EG  +    +K   ++KI+ + +GGSI K   + H   D  +   H K  +EKG  L + VE+YLL + + Y
Sbjct:    1 MGVFNYETETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: MPAG1_ALNGL (Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 7.074e-24
Identity = 57/159 (35.85%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E PS +  +RLFKA + D    LPK+AP+ + S++ ++G+GG GTIK + F +G  +K  K+R+D +D  N    ++  EG  +    +K   ++KI+ + +GGSI K   + H   D  +N    K  +EK   L + VE+YLL + + Y
Sbjct:    1 MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGDALEKVCNEIKIVAAPDGGSILKISNKFHTKGDHEINAEQIKIEKEKAVGLLKAVESYLLAHSDAY 159          
The following BLAST results are available for this feature:
BLAST of DY260246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PR1_PHAVU3.751e-2538.46Pathogenesis-related protein 1 OS=Phaseolus vulgar... [more]
BEV1J_BETVE1.862e-2438.36Major pollen allergen Bet v 1-J OS=Betula verrucos... [more]
BEV1C_BETVE1.862e-2436.48Major pollen allergen Bet v 1-C OS=Betula verrucos... [more]
BEV1K_BETVE3.175e-2436.48Major pollen allergen Bet v 1-K OS=Betula verrucos... [more]
BEV1F_BETVE3.175e-2438.36Major pollen allergen Bet v 1-F/I OS=Betula verruc... [more]
BEV1A_BETVE3.175e-2438.36Major pollen allergen Bet v 1-A OS=Betula verrucos... [more]
ABR18_PEA3.175e-2435.67ABA-responsive protein ABR18 OS=Pisum sativum PE=2... [more]
BEV1E_BETVE4.147e-2438.36Major pollen allergen Bet v 1-E OS=Betula verrucos... [more]
BEV1B_BETVE4.147e-2436.48Major pollen allergen Bet v 1-B OS=Betula verrucos... [more]
MPAG1_ALNGL7.074e-2435.85Major pollen allergen Aln g 1 OS=Alnus glutinosa P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260246 ID=DY260246; Name=DY260246; organism=Citrus clementina; type=EST; length=1022bp
TTGAACCTCTCCCTTTTCTCCAATTAAGCAATAGATATTTAACATGGGTG
TCATTCCCGTTGAGAAAGAGGTGCCATCGGCTGTTGCCCCATCAAGATTG
TTCAAGGCTTTAAATGACACTCCCAATTTTTTGCCAAAGATCGCGCCTCA
AACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGCACTA
TCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCCGACCAAGCAA
AGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTACGTA
TGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGATGTTA
AGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGCGGAG
GTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGGAATC
CGAAGAAAAAGGATCGGAATTGTTCCAGCTCGTGGAAGCCTATCTCTTGG
GTAATCCCAATCTCTATGCTTAAATCAATCCTCCATATGCATTGGCTTTG
CCCATTGCCAAATTTCCCGCTAGCTAACTAAATAAGGCTGGTGCCCTTGT
ACGTAATTAAGCTTTTGAAGCTGAATGTAAATACCCCCGTATGTACCTTA
GTGTGTTCCTTAAAAAAAAAAAAAAAAAAAAAAAACCCCCCTTTCTTGTA
CCAAGTTTGGCCTTAAACAAAAAGCTTGCTTATCCATTTGTTGCCCCCAA
ACCGGCCCCACCCCTTCCAAATAAAACTCTTATTTTCCACCCCCCCGAAA
TCCCCCAAAGTGAGTTCTAATAACTGGTCCTAACTGTTTCCCTGGCCGCC
CCCCGGCCCCGGGTCCCAAAACCCTCAGGTTTCCCTGCCCCAGAAAAAAA
ATTTTCCCCCCTGCTCAAAAACCTCCCCCCCCCCTCAAACCAAACCGCCC
TTTCTTCCCCTCCCCGATTTTCCCCTCCCCCTTTTTTTGAAAAACCCCCT
TCCCTCTAAGAACAGAAAAAAA
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