DY260246

Overview
NameDY260246
Unique NameDY260246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PR2_PETCR (Pathogenesis-related protein 2 OS=Petroselinum crispum GN=PR2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.069e-22
Identity = 58/159 (36.48%), Postives = 88/159 (55.35%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MG +  + EV S+V    ++K  L D  N +PK+ PQ IKSI+I+ GDGGAGTIK +   +   +   KQRID +D + L   Y+  EGD +L + +       ++ + +GG I K         D ++ E + KE+ E+   +F+ +EAYLL NP  Y
Sbjct:    1 MGAVTTDVEVASSVPAQTIYKGFLLDMDNIIPKVLPQAIKSIEIISGDGGAGTIKKVTLGEVSQFTVVKQRIDEIDAEALKYSYSIIEGDLLLGIIESITSKFTVVPT-DGGCIVKNTTIYTPIGDAVIPEENVKEATEQSGMVFKAIEAYLLANPGAY 158          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: ALL2_APIGR (Major allergen Api g 2 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.926e-21
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            MGV     E PS V+  ++++  L D     PK+ PQ IKS++IL+GDGG GT+KL++  +   Y   KQ++D +D+  L   YTT  GD ++ + +  V +  ++ + +GG I K     +   D ++ E   KE+ EK +  F+ VEAYLL N
Sbjct:    1 MGVQKTVVEAPSTVSAEKMYQGFLLDMDTVFPKVLPQLIKSVEILEGDGGVGTVKLVHLGEATEYTTMKQKVDVIDKAGLAYTYTTIGGDILVDVLESVVNEFVVVPT-DGGCIVKNTTIYNTKGDAVLPEDKIKEATEKSALAFKAVEAYLLAN 154          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: SAM22_SOYBN (Stress-induced protein SAM22 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.286e-21
Identity = 57/157 (36.31%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKAL-NDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MGV   E E+ S VAP+ L+KAL  D  N +PK A  + KS++ ++G+GG GTIK + F + G  K    +I+++DE NL   Y+   G  +    +K  +D K++   NGGS  K   +     D   N+   K  + K   LF+ +EAYLL +P+
Sbjct:    1 MGVFTFEDEINSPVAPATLYKALVTDADNVIPK-ALDSFKSVENVEGNGGPGTIKKITFLEDGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKYETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 156          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: RAP_TAROF (Root allergen protein OS=Taraxacum officinale PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.286e-21
Identity = 48/150 (32.00%), Postives = 88/150 (58.67%), Query Frame = 2
Query:   62 EKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNP 508
            E E+ S+++PS +FKA + D     PK  P+T KSI  ++GDGG GTIK + ++DG  +  +K ++DA+D +N ++ YT +EGD ++ + +   + +K + S +GGS+ K         D  + + +    +E   + F+ +E Y++ +P
Sbjct:    5 EFEITSSLSPSNIFKAFVIDFDTIAPKAEPETYKSIKTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTIFEGDVLMGIIESGTHHLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGLKKTFKAIETYVISHP 154          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: L18A_LUPLU (Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.249e-20
Identity = 56/157 (35.67%), Postives = 95/157 (60.51%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MG+   E E  S VAP++L+KAL  D+   +PK+  + I+S++I++G+GG GTIK +     G+      ++DA+DE NLT  Y+   G+G+ +  +K  Y+ KI+   +GGSI K   + H   D +++E    +++ KG  LF+ +E Y+L +P+
Sbjct:    1 MGIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGD-VLSETVRDQAKFKGLGLFKAIEGYVLAHPD 155          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: DRR1_PEA (Disease resistance response protein Pi176 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.249e-20
Identity = 59/158 (37.34%), Postives = 84/158 (53.16%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKAL-NDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLV-NEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MGV  VE E+ S VAP+ L+KAL  D     PK+    IKSI+I++G+GGAGTIK L F + G  K    +++ +D  NL   Y+   G G     +K  ++ K+    NGGSI K   + +   D     E   K  + KG  LF+ +E Y L +P+
Sbjct:    1 MGVFNVEDEITSVVAPAILYKALVTDADTLTPKVI-DAIKSIEIVEGNGGAGTIKKLTFVEDGETKHVLHKVELVDVANLAYNYSIVGGVGFPDTVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAAAPTEEQLKSDKAKGDGLFKALERYCLAHPD 157          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: ALL1_APIGR (Major allergen Api g 1 OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.130e-20
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            MGV     E+ S+V+  ++F+  + D    LPK AP   KS++I +GDGG GT+K++   DGG       RID ++++ LT  Y+  +GD +L   +     V ++ + +GGSICK  A  H   D +V E + K + E+ + LF+ +EAYL+ N
Sbjct:    1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: DRR4_PEA (Disease resistance response protein DRRG49-C OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.633e-20
Identity = 53/156 (33.97%), Postives = 82/156 (52.56%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MGV   E+E  S VAP+ L KAL    + L       IKSI+I++G+GG GTIK L F + G  K    +++ +D+ N    Y+   G G+    +K  ++ K+    NGGSI K   + +   D + +E   K  + KG  +F+ +E Y + NP+
Sbjct:    1 MGVFNFEEEATSIVAPATLHKALVTDADILTPKVIDAIKSIEIVEGNGGPGTIKKLTFVEDGETKYVLHKVELVDDANWANNYSIVGGVGLPDTVEKISFEAKLSAGPNGGSIAKLSVKYYTKGDAIPSEEEIKNGKAKGEGIFKALEGYCVANPD 156          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: ABR17_PEA (ABA-responsive protein ABR17 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.093e-20
Identity = 51/156 (32.69%), Postives = 86/156 (55.13%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKAL-NDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNP 508
            MGV   + E  S VAP +L+KAL  D    +PK+  +  + ++I++G+GG GTIK L+  + G       ++DA+DE N    Y+   G G+ +  +K  ++  I+   +GGSI K   + H   D  +++    E++ KG+ L + +E Y+L NP
Sbjct:    1 MGVFVFDDEYVSTVAPPKLYKALAKDADEIVPKVIKEA-QGVEIIEGNGGPGTIKKLSILEDGKTNYVLHKLDAVDEANFGYNYSLVGGPGLHESLEKVAFETIILAGSDGGSIVKISVKYHTKGDAALSDAVRDETKAKGTGLIKAIEGYVLANP 155          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PR13_PETCR (Pathogenesis-related protein B OS=Petroselinum crispum GN=PCPR1-3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.381e-19
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            MGV   E E  S+V+  +LFK L  D    LP++ P  IKS + L+GDGG GT+KL++  D   +K  KQ++DA+D+   T  Y+  +GD +L   +        + + +GG   K     +   D +V E + K + ++   +F+ VEAYL+ N
Sbjct:    1 MGVQKSEVEATSSVSAEKLFKGLCLDIDTLLPRVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSIIDGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
The following BLAST results are available for this feature:
BLAST of DY260246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PR2_PETCR5.069e-2236.48Pathogenesis-related protein 2 OS=Petroselinum cri... [more]
ALL2_APIGR1.926e-2136.13Major allergen Api g 2 OS=Apium graveolens PE=1 SV... [more]
SAM22_SOYBN3.286e-2136.31Stress-induced protein SAM22 OS=Glycine max PE=1 S... [more]
RAP_TAROF3.286e-2132.00Root allergen protein OS=Taraxacum officinale PE=1... [more]
L18A_LUPLU1.249e-2035.67Protein LlR18A OS=Lupinus luteus GN=LLR18A PE=1 SV... [more]
DRR1_PEA1.249e-2037.34Disease resistance response protein Pi176 OS=Pisum... [more]
ALL1_APIGR2.130e-2036.13Major allergen Api g 1 OS=Apium graveolens PE=1 SV... [more]
DRR4_PEA3.633e-2033.97Disease resistance response protein DRRG49-C OS=Pi... [more]
ABR17_PEA8.093e-2032.69ABA-responsive protein ABR17 OS=Pisum sativum PE=2... [more]
PR13_PETCR1.381e-1934.19Pathogenesis-related protein B OS=Petroselinum cri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YN12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260246 ID=DY260246; Name=DY260246; organism=Citrus clementina; type=EST; length=1022bp
TTGAACCTCTCCCTTTTCTCCAATTAAGCAATAGATATTTAACATGGGTG
TCATTCCCGTTGAGAAAGAGGTGCCATCGGCTGTTGCCCCATCAAGATTG
TTCAAGGCTTTAAATGACACTCCCAATTTTTTGCCAAAGATCGCGCCTCA
AACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGCACTA
TCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCCGACCAAGCAA
AGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTACGTA
TGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGATGTTA
AGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGCGGAG
GTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGGAATC
CGAAGAAAAAGGATCGGAATTGTTCCAGCTCGTGGAAGCCTATCTCTTGG
GTAATCCCAATCTCTATGCTTAAATCAATCCTCCATATGCATTGGCTTTG
CCCATTGCCAAATTTCCCGCTAGCTAACTAAATAAGGCTGGTGCCCTTGT
ACGTAATTAAGCTTTTGAAGCTGAATGTAAATACCCCCGTATGTACCTTA
GTGTGTTCCTTAAAAAAAAAAAAAAAAAAAAAAAACCCCCCTTTCTTGTA
CCAAGTTTGGCCTTAAACAAAAAGCTTGCTTATCCATTTGTTGCCCCCAA
ACCGGCCCCACCCCTTCCAAATAAAACTCTTATTTTCCACCCCCCCGAAA
TCCCCCAAAGTGAGTTCTAATAACTGGTCCTAACTGTTTCCCTGGCCGCC
CCCCGGCCCCGGGTCCCAAAACCCTCAGGTTTCCCTGCCCCAGAAAAAAA
ATTTTCCCCCCTGCTCAAAAACCTCCCCCCCCCCTCAAACCAAACCGCCC
TTTCTTCCCCTCCCCGATTTTCCCCTCCCCCTTTTTTTGAAAAACCCCCT
TCCCTCTAAGAACAGAAAAAAA
back to top