DY260246

Overview
NameDY260246
Unique NameDY260246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig468 contig Ccv1_Contig468:30..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PR11_PETCR (Pathogenesis-related protein A OS=Petroselinum crispum GN=PCPR1-1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.803e-19
Identity = 53/155 (34.19%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            MGV   E E  S+V+  +LFK L  D    LP++ P  IKS + L+GDGG GT+KL++  D   +K  KQ++DA+D+   T  Y+  +GD +L   +        + + +GG   K     +   D +V E + K + ++   +F+ VEAYL+ N
Sbjct:    1 MGVQKSEVETTSSVSAEKLFKGLCLDIDTLLPQVLPGAIKSSETLEGDGGVGTVKLVHLGDASPFKTMKQKVDAIDKATFTYSYSIIDGDILLGFIESINNHFTAVPNADGGCTVKSTIIFNTKGDAVVPEENIKFANDQNLTIFKAVEAYLIAN 155          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: RNS2_PANGI (Ribonuclease 2 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.688e-17
Identity = 55/154 (35.71%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   47 GVIPVEKEVPSAVAPSRLFK-ALNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            GV   E +  S V   +LFK +  D    +PK  P+ IKS+ +L+G+GG GTIK +   D   +   K RIDA+DE   T  YT   GD +L + +      KI+ + +GGS        +   D ++ E + K++ +K  +LF+ VEAYLL N
Sbjct:    1 GVQKTETQAISPVPAEKLFKGSFLDMDTVVPKAFPEGIKSVQVLEGNGGVGTIKNVTLGDATPFNTMKTRIDAIDEHAFTYTYTIIGGDILLDIIESIENHFKIVPT-DGGSTITQTTIYNTIGDAVIPEENIKDATDKSIQLFKAVEAYLLAN 153          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: DAU1_DAUCA (Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.094e-16
Identity = 48/155 (30.97%), Postives = 85/155 (54.84%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGN 505
            MG      E+ S+V+  ++F  +  D    +PK AP   KS+++ +GDGGAGT++++   +G        R DA++++ LT   T  +GD +L   +     + ++ + +GGSI K  A  H   D +V E + K ++ + + LF+ +EAYL+ N
Sbjct:    1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAAPGAYKSVEV-KGDGGAGTVRIITLPEGSPITSMTVRTDAVNKEALTYDSTVIDGDILLGFIESIETHLVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PR1_ASPOF (Pathogenesis-related protein 1 OS=Asparagus officinalis GN=PR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.756e-12
Identity = 51/152 (33.55%), Postives = 69/152 (45.39%), Query Frame = 2
Query:   68 EVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGG-NYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            EV   VA  R+FKA + D  N  PKI P  I    ++ GDG  GTI+ +   +    +   K+R+D +D D   +K T  EG G+ KM + +    K   S NGG + K  A              AKE     +   +  EAYLL NP  Y
Sbjct:    9 EVAVNVAAGRMFKAAMLDWHNLGPKIVPDFIAGGSVVSGDGSVGTIREIKINNPAIPFSYVKERLDFVDHDKFEVKQTLVEGGGLGKMFECATTHFKFEPSSNGGCLVKVTASYKILPGVADESAKAKEGI---TNHMKATEAYLLANPTAY 157          
The following BLAST results are available for this feature:
BLAST of DY260246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PR11_PETCR1.803e-1934.19Pathogenesis-related protein A OS=Petroselinum cri... [more]
RNS2_PANGI1.688e-1735.71Ribonuclease 2 OS=Panax ginseng PE=1 SV=1[more]
DAU1_DAUCA1.094e-1630.97Major allergen Dau c 1 OS=Daucus carota PE=1 SV=1[more]
PR1_ASPOF4.756e-1233.55Pathogenesis-related protein 1 OS=Asparagus offici... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YN12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260246 ID=DY260246; Name=DY260246; organism=Citrus clementina; type=EST; length=1022bp
TTGAACCTCTCCCTTTTCTCCAATTAAGCAATAGATATTTAACATGGGTG
TCATTCCCGTTGAGAAAGAGGTGCCATCGGCTGTTGCCCCATCAAGATTG
TTCAAGGCTTTAAATGACACTCCCAATTTTTTGCCAAAGATCGCGCCTCA
AACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGCACTA
TCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCCGACCAAGCAA
AGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTACGTA
TGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGATGTTA
AGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGCGGAG
GTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGGAATC
CGAAGAAAAAGGATCGGAATTGTTCCAGCTCGTGGAAGCCTATCTCTTGG
GTAATCCCAATCTCTATGCTTAAATCAATCCTCCATATGCATTGGCTTTG
CCCATTGCCAAATTTCCCGCTAGCTAACTAAATAAGGCTGGTGCCCTTGT
ACGTAATTAAGCTTTTGAAGCTGAATGTAAATACCCCCGTATGTACCTTA
GTGTGTTCCTTAAAAAAAAAAAAAAAAAAAAAAAACCCCCCTTTCTTGTA
CCAAGTTTGGCCTTAAACAAAAAGCTTGCTTATCCATTTGTTGCCCCCAA
ACCGGCCCCACCCCTTCCAAATAAAACTCTTATTTTCCACCCCCCCGAAA
TCCCCCAAAGTGAGTTCTAATAACTGGTCCTAACTGTTTCCCTGGCCGCC
CCCCGGCCCCGGGTCCCAAAACCCTCAGGTTTCCCTGCCCCAGAAAAAAA
ATTTTCCCCCCTGCTCAAAAACCTCCCCCCCCCCTCAAACCAAACCGCCC
TTTCTTCCCCTCCCCGATTTTCCCCTCCCCCTTTTTTTGAAAAACCCCCT
TCCCTCTAAGAACAGAAAAAAA
back to top