DY260252

Overview
NameDY260252
Unique NameDY260252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1055
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: AATC_RHIME (Putative aminotransferase aatC OS=Rhizobium meliloti GN=aatC PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.949e-22
Identity = 68/251 (27.09%), Postives = 118/251 (47.01%), Query Frame = 1
Query:  115 DTIHKTNLQPQQVAKCLEKFKTTIFTQMSMLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGK-NQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPE-FAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            +  HK    P  V + + + K       S  A     I+LG G P+   P  + D   + ++D + ++Y+   G+P    A A+ + +  G++++PE +V  T G  E  A     +  PGD V+   P Y  +     MAG  I+ I++ P E F  P+E           A+++N P NPT ++ T +    + +   ++D++V SD  Y ++ F +    S+   PG  + TV   S+ KTF + GW+
Sbjct:    2 EEFHKVRRLPPYVFEQVNRLKA------SARAAGADIIDLGMGNPDLPTPQSIVDKLCEVVQDPRTHRYSSSKGIPGLRRAQAAYYARRFGVKLNPETQVVATLGSKEGFANMAQAITAPGDVVLCPNPTYPIHAFGFLMAGGVIRSISVEPDESFFPPLERAVRHSIPKPLALILNYPSNPTAQVATLDFYKDVIAFAKKHDIIVLSDLAYSEIYFDDAPPPSVLEVPGATDVTVEFTSMSKTFSMPGWR 246          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_NATTJ (LL-diaminopimelate aminotransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=dapL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.075e-22
Identity = 69/245 (28.16%), Postives = 115/245 (46.94%), Query Frame = 1
Query:  148 QVAKCLEKFKTTIFTQMSMLAIKHGA-----INLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAF-EMDHISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            Q A  L      +F  +  +  K  A     I LG G P    P+ +  AA Q +  G+N  Y    G+ +   AI   ++   G+E++P++E+    G  E IA     ++NPGD   +  P Y  Y+    +AG     + L+     IP +E +  +     + + MN P+NPT  + +++  +     C +N +L+ +D  Y ++AF +    S+ S PG  E  +  NSL KTF +TGW+
Sbjct:    2 QSAHRLNNLPPYLFADLDKMVQKEQAKGKEIIKLGIGDPGMKPPEGIIKAATQEMYKGENHGYPAYDGIDKLKHAIKEYYQSRFGVELNPDREILTLIGSKEGIANISQAILNPGDINFIPDPSYPVYKNGTILAGGTPHSMPLKQDNGFIPELESIPQSRLSKGKIVFMNYPNNPTSAVASKDFYSHAVKFCQKNKLLLCNDAAYSEIAFDDYQPQSLLSVPGAKEVAIEFNSLSKTFNMTGWR 246          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: MTNE_BACSU (Transaminase mtnE OS=Bacillus subtilis GN=mtnE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.641e-21
Identity = 63/221 (28.51%), Postives = 111/221 (50.23%), Query Frame = 1
Query:  205 LAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            LA  H  INLGQG P+   P+ + +   +A+ D +N +Y+   G     SA A+ +K++ G+++DPE EV V  G    +      L+NPGD +++  P Y  Y + +++A AK++ + L      +P    + + I +  + + +N P+NPTG + T E          EN + V  D  Y  + F+    +S     G  +  + + +L KT+ + GW+
Sbjct:   28 LAEGHDVINLGQGNPDQPTPEHIVEEMKRAVADPENHKYSSFRGSYRLKSAAAAFYKREYGIDLDPETEVAVLFGGKAGLVELPQCLLNPGDTILVPDPGYPDYWSGVTLAKAKMEMMPLVKDRAFLPDYSSITAEIREQAKLMYLNYPNNPTGAVATSEFFEDTVRFAAENGICVVHDFAYGAVGFDGCKPLSFLQTEGAKDIGIEIYTLSKTYNMAGWR 248          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_DESVV (LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dapL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.641e-21
Identity = 67/231 (29.00%), Postives = 110/231 (47.62%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAI-RDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI-TLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASPPGMYEPTVPMNSLGKTFPLTGWKDRVANTLPPPFTGGGR 906
            I+LG G P+   P F+ +A  +AI R   +QY    G+  F   +A+ + +  G+ +DP  EV    G  E IA      INPGD V++  P Y  Y      AG +++ +  L   +F   ++ +     K  + I +N P+NPT           +  +C   DV++  D  Y ++ ++ D+   SI S PG  +  +  +SL KT+ +TGW+  +A   P    G G+
Sbjct:   36 ISLGIGDPDMATPGFIIEAMKEAIARPANHQYPSYVGMLAFRQEVANWYDRRFGVSLDPATEVIGLIGSKEGIAHFPFAFINPGDLVLVCTPNYPVYHIATGFAGGEVQFVPLLEENDFLPDLDAIPEDTWKRAKMIFVNYPNNPTAATAPLGFYEKLVDICRRFDVIIAHDTAYTEIYYDEDNRPPSILSVPGAKDVAIEFHSLSKTYNMTGWRVGMAVGNPTLVAGLGK 266          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_DESVM (LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dapL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.641e-21
Identity = 61/215 (28.37%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAI-RDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            I+LG G P+   PDF+ +A  +A+ R   +QY    G+ EF   +A+ + +  G+ +DP+ EV    G  E IA   L  +NPGD V++  P Y  Y       G +++ I L      +P ++ + +      + I +N P+NPT     R     +  +C +++V++  D  Y ++ ++ +   +SI    G  + T+  +SL KT+ +TGW+
Sbjct:   36 ISLGIGDPDMPTPDFIIEAMKKAVERPANHQYPSYVGMLEFRQEVANWYGRRFGVSLDPKTEVIGLIGSKEGIAHFPLAFVNPGDLVLVCTPNYPVYHIATGFVGGEVQFIPLVEENDYLPDLDAIPAATWDRAKMIFVNYPNNPTAATAPRAFYEKLIGICRKHNVIIAHDTAYTEVYYDENDKPMSILEVEGAKDVTIEFHSLSKTYNMTGWR 250          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_DESVH (LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dapL PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.641e-21
Identity = 67/231 (29.00%), Postives = 110/231 (47.62%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAI-RDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCI-TLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASPPGMYEPTVPMNSLGKTFPLTGWKDRVANTLPPPFTGGGR 906
            I+LG G P+   P F+ +A  +AI R   +QY    G+  F   +A+ + +  G+ +DP  EV    G  E IA      INPGD V++  P Y  Y      AG +++ +  L   +F   ++ +     K  + I +N P+NPT           +  +C   DV++  D  Y ++ ++ D+   SI S PG  +  +  +SL KT+ +TGW+  +A   P    G G+
Sbjct:   36 ISLGIGDPDMATPGFIIEAMKEAIARPANHQYPSYVGMLAFRQEVANWYDRRFGVSLDPATEVIGLIGSKEGIAHFPFAFINPGDLVLVCTPNYPVYHIATGFAGGEVQFVPLLEENDFLPDLDAIPEDTWKRAKMIFVNYPNNPTAATAPLGFYEKLVDICRRFDVIIAHDTAYTEIYYDEDNRPPSILSVPGAKDVAIEFHSLSKTYNMTGWRVGMAVGNPTLVAGLGK 266          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_DESAD (LL-diaminopimelate aminotransferase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=dapL PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.449e-21
Identity = 63/215 (29.30%), Postives = 109/215 (50.70%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            I+LG G P+   PDF+ +A  +A ++  N QY    G+  F  A+A  +K+   +E+D  KEV    G  E IA   L  +NPGD V++ +P Y  Y      AG +++ + L      +P ++ +        +   +N P+NPT    T E    + +   +++V++ +D  Y ++ ++ D   ISI   PG  +  +  +SL KT+ +TGW+
Sbjct:   36 ISLGIGDPDLPTPDFIIEALHKAAKNPVNHQYPSYVGLLTFRQAVADWYKERFDVELDATKEVVSLIGSKEGIAHFPLAFVNPGDLVLVASPNYPVYPVASGFAGGEVEIVPLLEENDFLPNLDAISDEKWDKCKIFFVNYPNNPTSATATPEFYAELVAKAKKHNVIIAADAAYTEVYYDEDKKPISILETPGAKDVAIEFHSLSKTYNMTGWR 250          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: AAT2_METJA (Probable aspartate aminotransferase 2 OS=Methanocaldococcus jannaschii GN=MJ0684 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.504e-21
Identity = 60/211 (28.44%), Postives = 104/211 (49.29%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAIRDGKNQYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDHISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            I+L  G P+F+ P  + D  I+++++GK  Y    G+ E    I+  +K     ++ P+  + +T G +  +   +  +I+ GDEV++  P Y  Y+  +   GAK       P      +E L+  +S  T+AI++N+P NP G++  RE    I     EN   + SDE+Y+ L +E    S        E T+ +N   K + +TGW+
Sbjct:   32 IHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPD-NIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAK-------PVFCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWR 230          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPAT_DESDG (LL-diaminopimelate aminotransferase OS=Desulfovibrio desulfuricans (strain G20) GN=dapL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.683e-21
Identity = 65/219 (29.68%), Postives = 107/219 (48.86%), Query Frame = 1
Query:  226 INLGQGFPNFDGPDFVKDAAIQAIRDGKN-QYARGHGVPEFNSAIASRFKKDSGLEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYE-ATLSMAGAKIKCITLRPPEFAIPIEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFEMDH--ISIASPPGMYEPTVPMNSLGKTFPLTGWKDRVA 870
            I+LG G P+   PDFV +A  +A     N QY    G+  F   +A+ +K+   +E+DP+ EV    G  E IA      +NPGD V++  P Y  Y  A+  M G   +   L   +F   ++ +     +  R I +N P+NPT  M  R     +  +  +++V+V  D  Y ++ +  ++  +SI   PG  +  +  NSL K + +TGW+  +A
Sbjct:   36 ISLGIGDPDMPTPDFVIEALKKAAEKPANHQYPSYTGMLAFRQEVANWYKRRYAVELDPKTEVLTLIGSKEGIAHFPTAFVNPGDLVLVCPPCYPVYAIASRFMGGVVQELPLLEENDFLPDLDAVDEATWEKARCIFVNYPNNPTAAMAPRSFFEKLIGIARKHNVIVVHDAAYTEMYYNENNRPLSIMEIPGAMDVAIEFNSLSKPYNMTGWRIAMA 254          
BLAST of DY260252 vs. ExPASy Swiss-Prot
Match: DAPT2_ANASP (LL-diaminopimelate aminotransferase 2 OS=Anabaena sp. (strain PCC 7120) GN=dapL2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.310e-20
Identity = 66/246 (26.83%), Postives = 119/246 (48.37%), Query Frame = 1
Query:  148 QVAKCLEKFKTTIFTQMS-----MLAIKHGAINLGQGFPNFDGPDFVKDAAIQAIRDGKNQ-YARGHGVPEFNSAIASRFKKDSG-LEVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKCITLRPPEFAIP-IEELKSTISKNTRAILMNTPHNPTGKMFTREELNVIASLCIENDVLVFSDEVYDKLAFE-MDHISIASPPGMYEPTVPMNSLGKTFPLTGWK 858
            Q AK LEK    +F +++     ++A     IN+G G P+   P  +  A  +AI D  N  Y    G  EF  A     ++  G ++++P  EV  + G  EAI  T L  +  GD  ++  P Y  Y  +   AG +   + L+     +P ++ +   +++  + + +N P+NPTG + T E    + +LC +  +L+  D  Y ++A++     S+   PG  +  +  +SL K++ +TGW+
Sbjct:    2 QFAKRLEKIPPYLFAEINRKREALIAKGVDIINIGVGDPDKPTPAHILQAMREAIDDASNHNYPPYEGTQEFREAAVEWMERRFGVMDLNPNTEVVSSIGSKEAIHNTFLAFVEAGDYTLIPDPGYPVYRTSTIFAGGEAFSMPLKAENKFLPDLDLIPEEVARKAKMLWINYPNNPTGALATLEFFEELVALCQQYSILLCHDHAYSEMAYDGYKPPSVLQIPGAKDIAIEFHSLSKSYNMTGWR 247          
The following BLAST results are available for this feature:
BLAST of DY260252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
AATC_RHIME6.949e-2227.09Putative aminotransferase aatC OS=Rhizobium melilo... [more]
DAPAT_NATTJ9.075e-2228.16LL-diaminopimelate aminotransferase OS=Natranaerob... [more]
MTNE_BACSU2.641e-2128.51Transaminase mtnE OS=Bacillus subtilis GN=mtnE PE=... [more]
DAPAT_DESVV2.641e-2129.00LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
DAPAT_DESVM2.641e-2128.37LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
DAPAT_DESVH2.641e-2129.00LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
DAPAT_DESAD3.449e-2129.30LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
AAT2_METJA4.504e-2128.44Probable aspartate aminotransferase 2 OS=Methanoca... [more]
DAPAT_DESDG7.683e-2129.68LL-diaminopimelate aminotransferase OS=Desulfovibr... [more]
DAPT2_ANASP1.310e-2026.83LL-diaminopimelate aminotransferase 2 OS=Anabaena ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260252 ID=DY260252; Name=DY260252; organism=Citrus clementina; type=EST; length=1055bp
CATACAATAAGCATTACTGATTCTGTCAACACCAGAAGAAGAGGAATCAG
TACCGCTTGCCCTAGGTACCCTTCTCTCATGGCGAGCTTGTCCACCGTTT
CCACCAATCAAAGCGACACCATCCACAAGACCAATCTTCAGCCTCAACAG
GTTGCTAAGTGCTTGGAGAAGTTTAAAACTACAATCTTTACACAAATGAG
TATGCTTGCCATCAAACATGGAGCTATAAATCTTGGTCAAGGCTTTCCCA
ACTTCGATGGCCCAGATTTTGTTAAAGATGCAGCGATTCAAGCCATAAGG
GATGGGAAGAATCAATATGCTCGTGGACATGGGGTTCCAGAGTTCAACTC
TGCCATTGCTTCCCGGTTTAAGAAAGATTCTGGGCTCGAGGTTGACCCTG
AAAAGGAAGTTACTGTTACCTCTGGGTGCACCGAAGCCATTGCTGCAACC
ATCTTAGGTTTGATTAATCCTGGAGATGAGGTGATCCTTTTTGCACCTTT
CTATGATTCCTATGAAGCTACTCTCTCCATGGCTGGTGCTAAAATTAAAT
GCATCACATTGCGCCCTCCAGAATTTGCCATCCCCATTGAAGAGCTCAAG
TCTACAATCTCAAAAAATACTCGTGCAATTCTTATGAACACTCCACATAA
CCCCACTGGAAAGATGTTCACTAGGGAGGAACTTAATGTTATTGCATCTC
TTTGCATTGAGAATGATGTGTTGGTTTTTAGTGATGAGGTCTATGATAAG
TTGGCTTTTGAAATGGATCACATTTCCATAGCCTCTCCTCCTGGAATGTA
TGAGCCTACTGTACCCATGAATTCCTTAGGGAAGACTTTCCCTTTAACGG
GTTGGAAAGATCGGGTGGCCAATACCCTCCCCCCCCCCTTTACTGGGGGG
GGGCGGCCGGCCCCCTTCTTTTCCCCCGTTTGCCCCCCTCCCCTCCCATG
GCAGGGGGCCCCCCCCGCCACCCCCTTAAAACTCCCGAAAAACTTACTAA
TGAAGAACCAAAAAAAAAATTTTCCCCGCAAAAAAAAGGCATTTTTTGGG
GGGAG
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