DY260255

Overview
NameDY260255
Unique NameDY260255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.987e-41
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDV 512
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+T  D+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDI 417          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.987e-41
Identity = 78/157 (49.68%), Postives = 113/157 (71.97%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDV 512
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA +ST AET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+T  D+
Sbjct:  261 QNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDI 417          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.655e-41
Identity = 77/157 (49.04%), Postives = 113/157 (71.97%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDV 512
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+T  D+
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDI 417          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 1.483e-40
Identity = 77/159 (48.43%), Postives = 112/159 (70.44%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+T  D+ +
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 9.610e-40
Identity = 76/159 (47.80%), Postives = 112/159 (70.44%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            + GKV+ V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NT+D++S Q+I+PQ Q+ R+SD+Y+   S +HNVA +GK+IA  ST  ET  P+ E++P ++LL P+++ F  I D   P +  +    FIS +YDA THFE+T  D+ +
Sbjct:  261 QNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.063e-38
Identity = 78/170 (45.88%), Postives = 113/170 (66.47%), Query Frame = 3
Query:    3 YMLP*PECKVEFDEEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDV 512
            YML  P  ++ + ++G  + V S  + A  K+++ DPSY   KVR VGR+ RAI I++HPIPNT++  SVQ+I+PQ Q+ R+ D+Y+   S  HNV PKG ++A +ST  ET +P +E+ PG+ LLGPV E F  + + YEPV + + D C+IS S DA +HFE+   DV
Sbjct:  248 YMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDV 417          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.446e-36
Identity = 78/174 (44.83%), Postives = 113/174 (64.94%), Query Frame = 3
Query:    3 YMLP*PECKVEFDEE-GKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            YML  P  +V + ++ GK   V ++  T     V+ DP+Y P K +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SD+Y+   S +HNV  KG ++A +ST  ETD P  EL+P   LLGP++E F  I + +EP  + S DN ++S SYDA +HFES   DV +
Sbjct:  257 YMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKD 430          
The following BLAST results are available for this feature:
BLAST of DY260255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIB_HUMAN2.987e-4149.04Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA2.987e-4149.68Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDIB_PONAB6.655e-4149.04Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_BOVIN1.483e-4048.43Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG9.610e-4047.80Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]
GDI1_SCHPO1.063e-3845.88Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST6.446e-3644.83Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260255 ID=DY260255; Name=DY260255; organism=Citrus clementina; type=EST; length=1053bp
CGTATATGTTGCCTTAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGT
AAAGTAGTCCGTGTCCCGTCCGAAGGGGAAACTGCCATGTGCAAGAAAGT
TGTTTGTGATCCTTCCTATTTGCCCAACAAGGTGAGGAAGGTTGGCAGGG
TTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGAT
TCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGATC
AGACATGTACCTCTTCTGTTGTTCCTACTCCCACAATGTTGCTCCAAAGG
GCAAATTCATTGCATTCCTATCGACTGAGGCAGAGACTGATCATCCACAG
ACTGAACTTAAGCCTGGAATTGATCTTTTGGGTCCCGTCGATGAAATATT
CTATGATATATATGACAGATATGAACCAGTTAATGAACCTTCTTTGGACA
ATTGCTTTATCTCCACGAGCTATGATGCCCCAACACACTTTGAGTCAACT
GTCACGGATGTACCTGAACATGTATACCATGATAACCGGAAAGGTTCTTG
ACCCCCGTGTGGATTTAAGTGCCGCCCAGTGCCGCCCAAGAATGAAGAAT
CTGCCACCCCCCGTTCATGTTTGCCCATGTAATGCCCGCCGTGGGATAAA
GCTCCAAAGAATGTGGGGGTTGGACCCTTGCACTTTGCCCAGGTTCCCGT
TCCCCCACTTGGTGATTTCTATACTTATTCACACGCACCGGAAACCCCGT
CTCAATTCCCTCCCCCCGGGAACTAACGTTGACAATTCCAACCCCGCACC
CCCTACTTCGCCAAAATTCAAATCCTAAACTTTTCCCCCCTCCAAAAAAA
AAAAAAAAAAAACCCCACCTCCCTGTTTCCTATCCGCCACCTCCCAAACC
GCCTTTTCCTCTCTCTTTCTTCCCCCCGGTAACGGGTCCTCACCCCCCTC
CAATTACACTCTTCTTTTTCCCCCCCCCCTCCCTCCCCCCTTCCCGTGCC
CCCTCCCTCCCCGGCCACCAACCGCTTTCCCCGCGACCCCCCGCCCCCCT
ACC
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