DY260256

Overview
NameDY260256
Unique NameDY260256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.083e-41
Identity = 74/163 (45.40%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            + ++ K+FIN E+ DSVSGK F   +P T E +  + EGDKEDV+ AV AARQAF  G PW     +ER  ++ K ADL+             + GKL S A + D+ G   TLRY AG ADKI G  +        YT  EP+GV G ILPWNFP  MF  K
Sbjct:   16 KFQYTKIFINNEWHDSVSGKKFPVFNPATEEKLCEVEEGDKEDVNKAVAAARQAFQIGSPWRTMDASERGRLLYKLADLVERDRLILATMESMNGGKLFSNAYLMDLGGCLKTLRYCAGWADKIQGRTIPSDGNFFTYTRHEPVGVCGQILPWNFPLLMFLWK 178          

HSP 2 Score: 53.5286 bits (127), Expect = 6.083e-41
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL+ A L K AG P GV+N+VPG+GPTAGAA+
Sbjct:  197 TPLSALHVATLIKEAGFPPGVVNIVPGYGPTAGAAI 232          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.032e-40
Identity = 73/160 (45.62%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   76 PEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            PEI + KLFIN E+ D+VS KTF T++P TGE I  +AEGD+ DVDLAVKAAR+AF  G PW R   +ER  ++ + ADL+             D GK    + + D+       RY+AG ADK HG+ + M      +T  EP+GV G I+PWNFP  M
Sbjct:   34 PEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVM 193          

HSP 2 Score: 52.373 bits (124), Expect = 1.032e-40
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N++ G+GPTAGAA+
Sbjct:  216 TPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAI 251          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1B1_RAT (Aldehyde dehydrogenase X, mitochondrial OS=Rattus norvegicus GN=Aldh1b1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.050e-40
Identity = 71/160 (44.38%), Postives = 95/160 (59.38%), Query Frame = 1
Query:   76 PEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            PEI++ +LFIN E+ D+VS KTF T++P TGE I  +AEGD+ DVDLAV+AAR+AF  G PW R   +ER  ++ + ADL+             D GK    + + D+       RY AG ADK HG+ + M      +T  EP+GV G I+PWNFP  M
Sbjct:   34 PEIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVM 193          

HSP 2 Score: 52.373 bits (124), Expect = 5.050e-40
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N++ G+GPTAGAA+
Sbjct:  216 TPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAI 251          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.897e-39
Identity = 72/163 (44.17%), Postives = 96/163 (58.90%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +I+  K+FIN E+ DSVS K F  ++P T E I  + EGDK DVD AVKAARQAF  G PW     +ER  ++ K ADL+             +AGK+ + A + D+  +   L+Y+AG ADKIHG+ +     +  YT REPIGV G I+PWN P  +F  K
Sbjct:   17 KIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKIHGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWK 179          

HSP 2 Score: 52.7582 bits (125), Expect = 1.897e-39
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL+ A L K AG P GV+N+VPG+GPTAG A+
Sbjct:  198 TPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGGAI 233          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.471e-39
Identity = 71/163 (43.56%), Postives = 96/163 (58.90%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +I+  K+FIN E+ +S++GK F  I+P T E I  + EGDK DVD AVKAARQAF  G PW     +ER  ++ K ADL+             +AGK+ + A + D   +   L+Y+AG ADKIHG+ +     +  YT REPIGV G I+PWN P  +F  K
Sbjct:   17 KIQHTKIFINNEWHNSLNGKKFPVINPATEEVICHVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGCLLNKLADLMERDRVLLATMESMNAGKIFTHAYLLDTEVSIKALKYFAGWADKIHGQTIPSDGDVFTYTRREPIGVCGQIIPWNGPLILFIWK 179          

HSP 2 Score: 53.5286 bits (127), Expect = 2.471e-39
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+NVVPG+G TAGAA+
Sbjct:  198 TPLTALYMASLIKEAGFPPGVVNVVPGYGSTAGAAI 233          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.194e-39
Identity = 73/163 (44.79%), Postives = 90/163 (55.21%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +I+  KLFIN E+ DSVSGKTF   +P T E I  + E DKEDVD AVKAAR+AF  G PW     +ER  ++ K ADLI             +AGK+ + A + D+      LRY AG ADKI G  + +      YT  EPIGV G I PWN P  +   K
Sbjct:   17 KIQHTKLFINNEWHDSVSGKTFPVFNPATEEKICEVEEADKEDVDKAVKAAREAFQMGSPWRTMDASERGQLIYKLADLIERDRLLLATLESINAGKIFASAYLMDLDYCIKVLRYCAGWADKIQGRTIPVDGEFFSYTRHEPIGVCGQIFPWNAPMILLACK 179          

HSP 2 Score: 53.9138 bits (128), Expect = 4.194e-39
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL+ A L K AG P GV+N+VPG+GPTAGAA+
Sbjct:  198 TPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAI 233          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.116e-39
Identity = 71/160 (44.38%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   76 PEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            P+I + +LFIN E+ D+VS KTF T++P TGE I  +AEGD+ DVD AVKAAR+AF  G PW R   +ER  ++   ADL+             D GK    +   D+       RY+AG ADK HG+ + M      +T  EPIGV G I+PWNFP  M
Sbjct:   32 PDIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPIGVCGQIIPWNFPLVM 191          

HSP 2 Score: 52.373 bits (124), Expect = 7.116e-39
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N++ G+GPTAGAA+
Sbjct:  214 TPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAI 249          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.116e-39
Identity = 70/160 (43.75%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   76 PEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            P+I + +LFIN E+ D+VS KTF T++P TGE I  +AEGD+ DVD AVKAAR+AF  G PW R   +ER  ++   ADL+             D GK    +   D+       RY+AG ADK HG+ + M      +T  EP+GV G I+PWNFP  M
Sbjct:   32 PDIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPLVM 191          

HSP 2 Score: 52.373 bits (124), Expect = 7.116e-39
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N++ G+GPTAGAA+
Sbjct:  214 TPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAI 249          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.116e-39
Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGP-WPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            EIK+ K+FIN E+ +S SG+ F   +P TGE +  + E DK D+D AV+AAR AF  G  W R   +ER  ++ K ADL+             + GK    A   D+ G   TLRYYAG ADKIHG  + +      +T  EPIGV G I+PWNFP  MF  K
Sbjct:   34 EIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWK 196          

HSP 2 Score: 53.5286 bits (127), Expect = 7.116e-39
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAALPPPYG 742
            TPL ALY   L K AG P GV+N++PG+GPTAGAA+    G
Sbjct:  215 TPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIG 255          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.116e-39
Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGP-WPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            EIK+ K+FIN E+ +S SG+ F   +P TGE +  + E DK D+D AV+AAR AF  G  W R   +ER  ++ K ADL+             + GK    A   D+ G   TLRYYAG ADKIHG  + +      +T  EPIGV G I+PWNFP  MF  K
Sbjct:   34 EIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWK 196          

HSP 2 Score: 53.5286 bits (127), Expect = 7.116e-39
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAALPPPYG 742
            TPL ALY   L K AG P GV+N++PG+GPTAGAA+    G
Sbjct:  215 TPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIG 255          
The following BLAST results are available for this feature:
BLAST of DY260256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
AL1A1_HORSE6.083e-4145.40Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1B1_MOUSE1.032e-4045.63Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1B1_RAT5.050e-4044.38Aldehyde dehydrogenase X, mitochondrial OS=Rattus ... [more]
AL1A7_MOUSE1.897e-3944.17Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A7_RAT2.471e-3943.56Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
ALDH1_MACPR4.194e-3944.79Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
AL1B1_PONAB7.116e-3944.38Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN7.116e-3943.75Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
AL1A2_RAT7.116e-3943.56Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE7.116e-3943.56Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260256 ID=DY260256; Name=DY260256; organism=Citrus clementina; type=EST; length=974bp
CACAAAGATAGAGATAGATAGAGAGAGATGGAGGGCAGTCTTAGCAATGG
AAGCTGCAAGTCTTTATTCAAGATGCCGGAGATCAAGTTCCCGAAGCTGT
TCATTAACGGAGAATTTGTTGATTCTGTTTCAGGGAAAACGTTTGAAACA
ATTGATCCAAGGACAGGAGAAGCCATAGCAAGAATTGCTGAAGGAGACAA
GGAGGATGTTGATCTTGCCGTCAAGGCAGCACGTCAGGCGTTTGATCACG
GTCCATGGCCACGTTTTTCTGGAGCCGAAAGGAGAGGGATAATGTTGAAG
TTTGCGGACTTAATTGAAGAACACGCAGAGGTATTAGCGGTGCTGGAAGC
TCCTGATGCTGGCAAATTGCACAGTTGGGCCAAAATGGGCGACATTCCAG
GAGCTGCTAATACCCTTCGTTACTATGCTGGTGCAGCTGATAAAATACAC
GGAGAGGTTCTAAAAATGTCTCGGGCGTTACAGGGCTACACGTTGCGTGA
GCCAATTGGCGTTGTTGGACACATCCTTCCCTGGAATTTTCCTACCACCA
TGTTTTTCCTGAAAGGTTAGCCCCTGCGTTAGCCGCTGGGTGCACCATGA
TTGTCAAGCCTGCTGAGCAACTCCCCTTATTGCCCTTTATTTTGCCCCTC
TTGCCAAGCGGGCTGGAGTACCTGATGGAGTGCTTAATGTTGTACCCGGA
TTTGGACCCACTGCCGGTGCCGCCCTCCCCCCCCCATATGGACATTGATA
AAATTAGTTTTACAGGGCCCACCGATGTCGGAACGCCAGTGGCGCAGGCC
CCCGCAAACAGCCACTCGAACCCCTTTTCCCACAATTAGGGGGCCAGCCA
CCTCTCCCGGTTTCTGATGAGGTTGATGCAAACCCGCCCCCAAACCTGGC
CCCTCCCGGCCACCCGGTTAAAAAGGGAAAAATTTGCGTGGCCACTTCCC
CCTGTTTTTCCCCCGGAAGGACTT
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