DY260256

Overview
NameDY260256
Unique NameDY260256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: IOLA_BACC1 (Methylmalonate semialdehyde dehydrogenase [acylating] OS=Bacillus cereus (strain ATCC 10987) GN=iolA PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.957e-11
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVL-KMSRALQGYTLREPIGVVGHILPWNFP 543
            EIK  K  INGE+V+S   +     +P TG+ IA +    KEDV+ AV+AA+ A++   W +     R   + K+  L+             + GK  + A  G++      +       + + G+ L  ++  + G   R PIGVV  I P+NFP
Sbjct:    5 EIKRVKNHINGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYE--TWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDA-TGEVQRGIEAVELATSTPNLMMGQALPNIASGIDGSIWRYPIGVVAGITPFNFP 157          

HSP 2 Score: 28.1054 bits (61), Expect = 1.957e-11
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPG 700
            TPL+A     L   AG P GVLN+V G
Sbjct:  183 TPLLAERLVELFYEAGFPKGVLNLVQG 209          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: IOLA1_BACCZ (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Bacillus cereus (strain ZK / E33L) GN=iolA1 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.957e-11
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVL-KMSRALQGYTLREPIGVVGHILPWNFP 543
            EIK  K  INGE+V+S   +     +P TG+ IA +    KEDV+ AV+AA+ A++   W +     R   + K+  L+             + GK  + A  G++      +       + + G+ L  ++  + G   R PIGVV  I P+NFP
Sbjct:    5 EIKRVKNHINGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYE--TWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDA-TGEVQRGIEAVELATSTPNLMMGQALPNIASGIDGSIWRYPIGVVAGITPFNFP 157          

HSP 2 Score: 28.1054 bits (61), Expect = 1.957e-11
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPG 700
            TPL+A     L   AG P GVLN+V G
Sbjct:  183 TPLLAERLVELFYEAGFPKGVLNLVQG 209          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: IOLA1_BACAH (Methylmalonate semialdehyde dehydrogenase [acylating] 1 OS=Bacillus thuringiensis (strain Al Hakam) GN=iolA1 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.957e-11
Identity = 46/156 (29.49%), Postives = 73/156 (46.79%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVL-KMSRALQGYTLREPIGVVGHILPWNFP 543
            EIK  K  INGE+V+S   +     +P TG+ IA +    KEDV+ AV+AA+ A++   W +     R   + K+  L+             + GK  + A  G++      +       + + G+ L  ++  + G   R PIGVV  I P+NFP
Sbjct:    5 EIKRVKNHINGEWVESTGTEVEAVPNPATGKIIAYVPLSPKEDVEKAVEAAKAAYE--TWSKVPVPNRSRQLYKYLQLLQENKEELAKIITLENGKTLTDA-TGEVQRGIEAVELATSTPNLMMGQALPNIASGIDGSIWRYPIGVVAGITPFNFP 157          

HSP 2 Score: 28.1054 bits (61), Expect = 1.957e-11
Identity = 14/27 (51.85%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPG 700
            TPL+A     L   AG P GVLN+V G
Sbjct:  183 TPLLAERLVELFYEAGFPKGVLNLVQG 209          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ASTD_AERS4 (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=astD PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.705e-11
Identity = 42/147 (28.57%), Postives = 64/147 (43.54%), Query Frame = 1
Query:  103 INGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFP 543
            I+G+++    GK FE++DP   E I +        VD AVKAAR AF H  W   +  +R  I+ ++ADL+             + GK   W    ++      +     A D+  G V       + +   +P GVV    P+NFP
Sbjct:    8 IDGQWLAG-EGKPFESMDPAKNEVIWQGGAASASQVDAAVKAARAAFYH--WSDLALEDRLAIVRRYADLLGEHKEALALTIARETGK-PLWETRTEVAAMQGKIAISIRAHDERTGTVENPMPGAKAFVRHKPHGVVAVFGPYNFP 150          

HSP 2 Score: 28.4906 bits (62), Expect = 2.705e-11
Identity = 15/39 (38.46%), Postives = 21/39 (53.85%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAALPPP 736
            TP++A     + + AG+P GVLN+V G   T  A    P
Sbjct:  176 TPMVAEAMLKIWQEAGLPKGVLNLVQGEVETGKALAGNP 214          

HSP 3 Score: 23.8682 bits (50), Expect = 2.705e-11
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  549 HVFPERLAPALAAGCTMIVKPAE 617
            H+    + PAL AG T++ KP+E
Sbjct:  152 HLPNGHIVPALIAGNTVVFKPSE 174          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVY (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=astD PE=3 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 5.829e-11
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 1
Query:  100 FINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFP 543
            +I GE+V+ + G+ F ++ P   + + R      E V++AVKAARQAF    W + S AER  ++L FA+ +             + GK   W    +    A  +     A  +  GE  K +   Q      P+GV+    P+NFP
Sbjct:    4 WIAGEWVEGL-GEEFTSLSPYDNQVVWRGKGATAEQVEMAVKAARQAF--VGWKKLSVAEREAMVLAFAEQVKENSEEIAQVIAKETGK-PLWETRTEAAAMAGKIAISIRAYHERTGESQKEAAGNQIVLRHRPLGVMAVFGPYNFP 147          

HSP 2 Score: 25.7942 bits (55), Expect = 5.829e-11
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  549 HVFPERLAPALAAGCTMIVKPAEQ 620
            H+    + PAL AG T++ KP+EQ
Sbjct:  149 HLPNGHIVPALLAGNTVVFKPSEQ 172          

HSP 3 Score: 25.409 bits (54), Expect = 5.829e-11
Identity = 16/41 (39.02%), Postives = 20/41 (48.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAALPPPYG 742
            TP        L + AG+P GV+N+V G G   G AL    G
Sbjct:  173 TPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKG 212          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ASTD_VIBVU (N-succinylglutamate 5-semialdehyde dehydrogenase OS=Vibrio vulnificus GN=astD PE=3 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 7.528e-11
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query:  100 FINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFP 543
            +I GE+V+ + G+ F ++ P   + + R      E V++AVKAARQAF    W   S AER  ++L FA+ +             + GK   W    +    A  +     A  +  GE  K +   Q      P+GV+    P+NFP
Sbjct:    4 WIAGEWVEGL-GEEFTSLSPYDNQVVWRGKGATAEQVEMAVKAARQAF--VGWKTLSVAEREAVVLAFAEQVKENSEEIAQVIAKETGK-PLWETRTEAAAMAGKIAISIRAYHERTGESQKEAAGNQIVLRHRPLGVMAVFGPYNFP 147          

HSP 2 Score: 25.7942 bits (55), Expect = 7.528e-11
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 3
Query:  549 HVFPERLAPALAAGCTMIVKPAEQ 620
            H+    + PAL AG T++ KP+EQ
Sbjct:  149 HLPNGHIVPALLAGNTVVFKPSEQ 172          

HSP 3 Score: 25.409 bits (54), Expect = 7.528e-11
Identity = 16/41 (39.02%), Postives = 20/41 (48.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAALPPPYG 742
            TP        L + AG+P GV+N+V G G   G AL    G
Sbjct:  173 TPWTGELAMKLWQAAGLPQGVINLVQG-GKETGIALAESKG 212          
The following BLAST results are available for this feature:
BLAST of DY260256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
IOLA_BACC11.957e-1129.49Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_BACCZ1.957e-1129.49Methylmalonate semialdehyde dehydrogenase [acylati... [more]
IOLA1_BACAH1.957e-1129.49Methylmalonate semialdehyde dehydrogenase [acylati... [more]
ASTD_AERS42.705e-1128.57N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVY5.829e-1129.05N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]
ASTD_VIBVU7.528e-1129.05N-succinylglutamate 5-semialdehyde dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260256 ID=DY260256; Name=DY260256; organism=Citrus clementina; type=EST; length=974bp
CACAAAGATAGAGATAGATAGAGAGAGATGGAGGGCAGTCTTAGCAATGG
AAGCTGCAAGTCTTTATTCAAGATGCCGGAGATCAAGTTCCCGAAGCTGT
TCATTAACGGAGAATTTGTTGATTCTGTTTCAGGGAAAACGTTTGAAACA
ATTGATCCAAGGACAGGAGAAGCCATAGCAAGAATTGCTGAAGGAGACAA
GGAGGATGTTGATCTTGCCGTCAAGGCAGCACGTCAGGCGTTTGATCACG
GTCCATGGCCACGTTTTTCTGGAGCCGAAAGGAGAGGGATAATGTTGAAG
TTTGCGGACTTAATTGAAGAACACGCAGAGGTATTAGCGGTGCTGGAAGC
TCCTGATGCTGGCAAATTGCACAGTTGGGCCAAAATGGGCGACATTCCAG
GAGCTGCTAATACCCTTCGTTACTATGCTGGTGCAGCTGATAAAATACAC
GGAGAGGTTCTAAAAATGTCTCGGGCGTTACAGGGCTACACGTTGCGTGA
GCCAATTGGCGTTGTTGGACACATCCTTCCCTGGAATTTTCCTACCACCA
TGTTTTTCCTGAAAGGTTAGCCCCTGCGTTAGCCGCTGGGTGCACCATGA
TTGTCAAGCCTGCTGAGCAACTCCCCTTATTGCCCTTTATTTTGCCCCTC
TTGCCAAGCGGGCTGGAGTACCTGATGGAGTGCTTAATGTTGTACCCGGA
TTTGGACCCACTGCCGGTGCCGCCCTCCCCCCCCCATATGGACATTGATA
AAATTAGTTTTACAGGGCCCACCGATGTCGGAACGCCAGTGGCGCAGGCC
CCCGCAAACAGCCACTCGAACCCCTTTTCCCACAATTAGGGGGCCAGCCA
CCTCTCCCGGTTTCTGATGAGGTTGATGCAAACCCGCCCCCAAACCTGGC
CCCTCCCGGCCACCCGGTTAAAAAGGGAAAAATTTGCGTGGCCACTTCCC
CCTGTTTTTCCCCCGGAAGGACTT
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