DY260257

Overview
NameDY260257
Unique NameDY260257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLR_HALRO (Myosin regulatory light chain, smooth muscle OS=Halocynthia roretzi PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 43/138 (31.16%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D + DG I  ++L     SLG    +  ++DM+    A+ +G ++F  FL L   K+  T  EE + EAF++ D D  G I+   L  +M    ++ +  EV++M   + +D  G ++Y+    ++
Sbjct:   13 QIQEFKEAFTMIDANRDGFIDQEDLKDTYASLGRGIKDERIRDML----AESSGPVNFQIFLGLFGDKLSGTDPEETILEAFKILDADNKGVINKNYLAEIMMTQADRFSQSEVNQMFDISPIDVAGNLDYKSLCYII 146          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRA_HUMAN (Myosin regulatory light chain 2, atrial isoform OS=Homo sapiens GN=MYL7 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAFS  D++ DG I   +L      LG  + PE EL  M+ E    G G I+F  FL L   K+  T  EE +  AFR+FD    G ++  E + ++    +K +  EV++M     +D  G I+Y+    ++
Sbjct:   33 QIQEFKEAFSCIDQNRDGIICKADLRETYSQLGKVSVPEEELDAMLQE----GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKGVVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYII 167          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: LPS1A_LYTPI (Calcium-binding protein LPS1-alpha OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = 1
Query:   67 PPPDDQISEF-KEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADV-DGDGQINYEEFV 486
            P  D++  E+ K  F  FDK+GDG +TT E+   M S      + E++ +I+ VD + +G + F EF   +     D  S++ +K+ F   DKD+NG IS  E+   +T +  ++ D EV ++I+E+   D DG IN+ EFV
Sbjct:  160 PCKDEEYREYYKNEFEKFDKNGDGSLTTAEMSEFM-SKSTKYSDKEIEYLISRVDLNDDGRVQFNEFFMHL-----DGVSKDHIKQQFMAIDKDKNGKISPEEMVFGITKIYRQMVDFEVAKLIKESSFEDDDGYINFNEFV 295          

HSP 2 Score: 79.337 bits (194), Expect = 3.996e-14
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   73 PDDQISEFKEAFS-LFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT-HSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAQ 504
            P D I   K+ F   +D + DG ++  EL  +M     N  E   Q++I  +D + +G + F EF+  M    K+  +S +E+K+ F   DKD NG IS  EL   +  +  K+ D   +++I+EAD DGDG +N EEF   ++ +
Sbjct:   13 PKDAIEALKQEFKDNYDTNKDGTVSCAELVKLM-----NWTEEMAQNIIARLDVNSDGHMQFDEFILYMEGSTKERLYSSDEIKQMFDDLDKDGNGRISPDELNKGVREIYTKVVDGMANKLIQEADKDGDGHVNMEEFFDTLVVK 153          

HSP 3 Score: 76.6406 bits (187), Expect = 2.590e-13
Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   91 EFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKM-------KDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 483
            E K+ F   DKDG+G I+  EL   +R +     +     +I E D DG+G ++  EF + +  K+       KD    E  K  F  FDK+ +G ++ AE+   M+    K +D+E++ +I   D++ DG++ + EF
Sbjct:   89 EIKQMFDDLDKDGNGRISPDELNKGVREIYTKVVDGMANKLIQEADKDGDGHVNMEEFFDTLVVKLPIGMGPCKDEEYREYYKNEFEKFDKNGDGSLTTAEMSEFMSK-STKYSDKEIEYLISRVDLNDDGRVQFNEF 225          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CANB1_RAT (Calcineurin subunit B type 1 OS=Rattus norvegicus GN=Ppp3r1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            D+I    + F   D D  G ++ +E    +  L  NP    +Q +I+  D DGNG +DF EF+  +++       E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   18 DEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CANB1_MOUSE (Calcineurin subunit B type 1 OS=Mus musculus GN=Ppp3r1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            D+I    + F   D D  G ++ +E    +  L  NP    +Q +I+  D DGNG +DF EF+  +++       E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   18 DEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CANB1_HUMAN (Calcineurin subunit B type 1 OS=Homo sapiens GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            D+I    + F   D D  G ++ +E    +  L  NP    +Q +I+  D DGNG +DF EF+  +++       E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   18 DEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CANB1_BOVIN (Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3R1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.720e-15
Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            D+I    + F   D D  G ++ +E    +  L  NP    +Q +I+  D DGNG +DF EF+  +++       E++L+ AFR++D D++G+IS  EL  V+      NL +    + VD+ I  AD DGDG+I++EEF  V+
Sbjct:   18 DEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPL---VQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 157          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPKM_ARATH (Calcium-dependent protein kinase 22 OS=Arabidopsis thaliana GN=CPK22 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 6.164e-15
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   58 MADPPPDDQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDE-EVDEMIREADVDGDGQINYEEFVKVM 495
            +A+   +++I   K  F   D D  G IT +EL   +   G    E E++ ++   D DGNGTID+ EF++    + +    +E L +AF+ FDKD +G I+  E+   M   G  + DE    ++I E D + DG+I+YEEF  +M
Sbjct:  339 IAEGLSEEEIKGLKTMFENMDMDKSGSITYEELKMGLNRHGSKLSETEVKQLMEAADVDGNGTIDYIEFISATMHRHR-LERDEHLYKAFQYFDKDGSGHITKEEVEIAMKEHG--MGDEANAKDLISEFDKNNDGKIDYEEFCTMM 482          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRA_MOUSE (Myosin regulatory light chain 2, atrial isoform OS=Mus musculus GN=Myl7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.051e-15
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAFS  D++ DG I   +L      LG  + PE EL  M+ E    G G I+F  FL L   K+  T  EE +  AFR+FD    G ++  E + ++    +K +  EV+++     +D  G I+Y+    ++
Sbjct:   33 QIQEFKEAFSCIDQNRDGIICKSDLKETYSQLGRVSVPEEELDAMLQE----GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGQGVVNKEEFKQLLMTQADKFSPAEVEQLFALTPMDLAGNIDYKSLCYII 167          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CETNB_DICDI (Centrin-B OS=Dictyostelium discoideum GN=cenB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.051e-14
Identity = 49/140 (35.00%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   76 DDQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            DDQISE KE+F +F  D +G +   ++    ++LG    E  L+     +   G  +I F  F  L++  +    S   L++AF++F KD +G I+  +L+ V  N+GE+ +D ++ +MI  AD DGDG IN  EF+ +M
Sbjct:   11 DDQISEIKESFDMFKSD-NGKLDNDQIKYAFKALGCEITEETLE----LIKKKGQKSISFNSFFELVSPYIPKRDSMSTLEQAFKLFVKDGSG-ITFKDLKKVAINIGEECSDSDLYDMIEFADTDGDGVINKSEFISLM 144          
The following BLAST results are available for this feature:
BLAST of DY260257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
MLR_HALRO4.720e-1531.16Myosin regulatory light chain, smooth muscle OS=Ha... [more]
MLRA_HUMAN4.720e-1534.53Myosin regulatory light chain 2, atrial isoform OS... [more]
LPS1A_LYTPI4.720e-1535.21Calcium-binding protein LPS1-alpha OS=Lytechinus p... [more]
CANB1_RAT4.720e-1534.72Calcineurin subunit B type 1 OS=Rattus norvegicus ... [more]
CANB1_MOUSE4.720e-1534.72Calcineurin subunit B type 1 OS=Mus musculus GN=Pp... [more]
CANB1_HUMAN4.720e-1534.72Calcineurin subunit B type 1 OS=Homo sapiens GN=PP... [more]
CANB1_BOVIN4.720e-1534.72Calcineurin subunit B type 1 OS=Bos taurus GN=PPP3... [more]
CDPKM_ARATH6.164e-1534.01Calcium-dependent protein kinase 22 OS=Arabidopsis... [more]
MLRA_MOUSE8.051e-1533.81Myosin regulatory light chain 2, atrial isoform OS... [more]
CETNB_DICDI1.051e-1435.00Centrin-B OS=Dictyostelium discoideum GN=cenB PE=3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YO09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260257 ID=DY260257; Name=DY260257; organism=Citrus clementina; type=EST; length=1038bp
GGAAAAAAATAAATATTTACCTATTTCCGAGTTGAAAAAACCAACGGAAG
AAGAAAAATGGCGGATCCGCCTCCGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCCCTGTTATGAGGTCACTGGGTCCGAACCCCCCTGAGGCTGA
GCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCCAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAA
TGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CCAGTAATGACCCCCACCCACCCATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCCCTTTTACAATTTTTAATTTGATAGTCCT
GAGGGTCCGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGCCTGAT
GGTGTAGGAAGAATGTTGTCCCCCCCGTCAATATGTCTTGTGACTCCCCA
AACTTTTCCGTTTTTATTATTTTAGTTGTTCTGCTGTTCCCAAACAAAAA
AAAAAAAAAAAACCCCACCTTCCCTGGACCAAGTTGGCCTTCTAAAAAAG
GCCTTGCCTATCAATTTTGTTGGCCACCAACCCGGCCCCCATCCCCCCCA
AACAAAATCCTTTTTTTTCCCCCCCCCGCTGAAACCCCCCAAAAGGGGAG
CCTATTAACGGGGCCCCAACCGGGTTCCCCCGGCCCCCCCCGGCCCGGGG
TCCCCAAACCCCCTGCGGTGCCCCTTGCCCCCAAAATAAAAAACATCCCC
CCCCCGGTTACACACACCCCCCCCCCCCCCCCCCAACA
back to top