DY260257

Overview
NameDY260257
Unique NameDY260257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRS_BOVIN (Myosin regulatory light chain 2, skeletal muscle isoform OS=Bos taurus GN=MYLPF PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.331e-12
Identity = 43/139 (30.94%), Postives = 70/139 (50.36%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D++ DG I  ++L     ++G  N    EL  M+ E     +G I+F  FLN+   K+K    E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLNMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 161          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CANB2_HUMAN (Calcineurin subunit B type 2 OS=Homo sapiens GN=PPP3R2 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 8.331e-12
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   76 DDQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNL-GEKLTD----EEVDEMIREADVDGDGQINYEEFVKVM 495
            +D+I      F   D D  G ++ +E    +  L  NP    ++ +I+  D DG+G +DF EF+   ++       E++L+ AF ++D D++G+IS  EL  V+  + G  LTD    + VD+ I   D DGDG+I++EEF  V+
Sbjct:   17 NDEIKRLGRRFKKLDLDKSGSLSVEEFMS-LPELRHNPL---VRRVIDVFDTDGDGEVDFKEFILGTSQFSVKGDEEQKLRFAFSIYDMDKDGYISNGELFQVLKMMVGNNLTDWQLQQLVDKTIIILDKDGDGKISFEEFSAVV 157          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: FIMB_DICDI (Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.088e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   76 DDQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMAR 282
            + +ISEFK +F+ FD++GDG I+  EL  ++   G      E++DMI EVD DGNG+IDF EFL +M +
Sbjct:    6 ESEISEFKASFNQFDENGDGQISALELQKILTKCGEKVTGVEVRDMIKEVDTDGNGSIDFKEFLQVMQK 74          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAYO (Calcium-dependent protein kinase 4 OS=Plasmodium yoelii yoelii GN=CPK4 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.421e-11
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKEL-----------GPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 483
            D+  E  + F   DK+GDG +   EL           G     L     E E+  +++ +D D NG I++ EFL  +A   K   S E L++AF++FDKD +G ISA EL  +   LG+ ++ +    +++E D + DG+I+++EF
Sbjct:  376 DETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGDDTTDLDNAAIEVEVDQILSSIDLDQNGYIEYSEFLT-VAIDRKLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLGD-VSSDCWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPK4_PLABA (Calcium-dependent protein kinase 4 OS=Plasmodium berghei (strain Anka) GN=CPK4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.421e-11
Identity = 48/146 (32.88%), Postives = 78/146 (53.42%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKEL-----------GPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 483
            D+  E  + F   DK+GDG +   EL           G     L     E E+  +++ +D D NG I++ EFL  +A   K   S E L++AF++FDKD +G ISA EL  +   LG+ ++ +    +++E D + DG+I+++EF
Sbjct:  376 DETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGDDTTDLDNAAIEVEVDQILSSIDLDQNGYIEYSEFLT-VAIDRKLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLGD-VSSDCWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAF7 (Calcium-dependent protein kinase 4 OS=Plasmodium falciparum (isolate 3D7) GN=CPK4 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.856e-11
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKEL-----------GPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 483
            D+  E  + F   DK+GDG +   EL           G     L     E E+  ++N +D D NG I++ EFL +   + K   S E L++AF++FDKD +G ISA EL  +   L + ++ E    +++E D + DG+I+++EF
Sbjct:  376 DETKELTKIFKKMDKNGDGQLDRNELIIGYKELLKLKGEDTSDLDNAAIEYEVDQILNSIDLDQNGYIEYSEFLTVSIDR-KLLLSTERLEKAFKLFDKDGSGKISANELAQLF-GLSD-VSSECWKTVLKEVDQNNDGEIDFKEF 518          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MYL10_HUMAN (Myosin regulatory light chain 10 OS=Homo sapiens GN=MYL10 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.424e-11
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 1
Query:  100 EAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            +AF++ D++ DG I  ++L     +LG  N    EL+ M+ E      G I+F  FL +   K+K T  EE +  AF+VFD +  GF+ A  ++  +    ++ ++EEV +M      D  G ++Y     V+
Sbjct:   91 QAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAP----GPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADVIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVI 219          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.424e-11
Identity = 48/136 (35.29%), Postives = 73/136 (53.68%), Query Frame = 1
Query:   85 ISEFKEAFSLFDKDGDGCITTKELGPVMRSLGPNPPEAELQDMINEVDADGNGTIDFPEFLNLM-ARKMKDTHSEEELKEAFRVFDK--DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEF 483
            IS   EAF  FD D DG +T  EL  ++ SLG + PE E++DM+   DAD +G +   E L++M A ++        L+ A    +     +G + A EL  +++ +G   + E+  E+I   D DGDG I+ EEF
Sbjct:   29 ISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMG-TASVEDCMEIIACMDGDGDGAISVEEF 163          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPK1_PLAYO (Calcium-dependent protein kinase 1 OS=Plasmodium yoelii yoelii GN=CPK1 PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 3.166e-11
Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = 1
Query:   79 DQISEFKEAFSLFDKDGDGCITTKELGP---VMRS----LGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHV--------------MTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            ++  E  + F   DK+GDG +  KEL     V+R+    LG     E E+ +++ EVD D NG I++ EF+++   K +   SEE L+ AF +FD D++G I+  EL +V              +T++ EK      ++++ EAD + D  I+++EFV +M
Sbjct:  371 EERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK-QILFSEERLRRAFNLFDTDKSGKITKEELANVIIRGFYFFTYSLFGLTSVSEKTW----NDVLGEADQNKDNMIDFDEFVSMM 526          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRS_RAT (Myosin regulatory light chain 2, skeletal muscle isoform OS=Rattus norvegicus GN=Mylpf PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 4.135e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D++ DG I  ++L     ++G  N    EL  M+ E     +G I+F  FL +   K+K    E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
The following BLAST results are available for this feature:
BLAST of DY260257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
MLRS_BOVIN8.331e-1230.94Myosin regulatory light chain 2, skeletal muscle i... [more]
CANB2_HUMAN8.331e-1233.10Calcineurin subunit B type 2 OS=Homo sapiens GN=PP... [more]
FIMB_DICDI1.088e-1147.83Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 S... [more]
CDPK4_PLAYO1.421e-1132.88Calcium-dependent protein kinase 4 OS=Plasmodium y... [more]
CDPK4_PLABA1.421e-1132.88Calcium-dependent protein kinase 4 OS=Plasmodium b... [more]
CDPK4_PLAF71.856e-1132.88Calcium-dependent protein kinase 4 OS=Plasmodium f... [more]
MYL10_HUMAN2.424e-1130.08Myosin regulatory light chain 10 OS=Homo sapiens G... [more]
CML29_ORYSJ2.424e-1135.29Probable calcium-binding protein CML29 OS=Oryza sa... [more]
CDPK1_PLAYO3.166e-1132.30Calcium-dependent protein kinase 1 OS=Plasmodium y... [more]
MLRS_RAT4.135e-1130.22Myosin regulatory light chain 2, skeletal muscle i... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260257 ID=DY260257; Name=DY260257; organism=Citrus clementina; type=EST; length=1038bp
GGAAAAAAATAAATATTTACCTATTTCCGAGTTGAAAAAACCAACGGAAG
AAGAAAAATGGCGGATCCGCCTCCGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCCCTGTTATGAGGTCACTGGGTCCGAACCCCCCTGAGGCTGA
GCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCCAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAA
TGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CCAGTAATGACCCCCACCCACCCATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCCCTTTTACAATTTTTAATTTGATAGTCCT
GAGGGTCCGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGCCTGAT
GGTGTAGGAAGAATGTTGTCCCCCCCGTCAATATGTCTTGTGACTCCCCA
AACTTTTCCGTTTTTATTATTTTAGTTGTTCTGCTGTTCCCAAACAAAAA
AAAAAAAAAAAACCCCACCTTCCCTGGACCAAGTTGGCCTTCTAAAAAAG
GCCTTGCCTATCAATTTTGTTGGCCACCAACCCGGCCCCCATCCCCCCCA
AACAAAATCCTTTTTTTTCCCCCCCCCGCTGAAACCCCCCAAAAGGGGAG
CCTATTAACGGGGCCCCAACCGGGTTCCCCCGGCCCCCCCCGGCCCGGGG
TCCCCAAACCCCCTGCGGTGCCCCTTGCCCCCAAAATAAAAAACATCCCC
CCCCCGGTTACACACACCCCCCCCCCCCCCCCCCAACA
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