DY260257

Overview
NameDY260257
Unique NameDY260257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRS_RABIT (Myosin regulatory light chain 2, skeletal muscle isoform type 2 OS=Oryctolagus cuniculus GN=MYLPF PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.135e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D++ DG I  ++L     ++G  N    EL  M+ E     +G I+F  FL +   K+K    E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 161          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRS_MOUSE (Myosin regulatory light chain 2, skeletal muscle isoform OS=Mus musculus GN=Mylpf PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.135e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D++ DG I  ++L     ++G  N    EL  M+ E     +G I+F  FL +   K+K    E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: MLRS_HUMAN (Myosin regulatory light chain 2, skeletal muscle isoform OS=Homo sapiens GN=MYLPF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.135e-11
Identity = 42/139 (30.22%), Postives = 69/139 (49.64%), Query Frame = 1
Query:   82 QISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTHSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            QI EFKEAF++ D++ DG I  ++L     ++G  N    EL  M+ E     +G I+F  FL +   K+K    E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   26 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 160          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: YNE5_CAEEL (Uncharacterized calcium-binding protein R08D7.5 OS=Caenorhabditis elegans GN=R08D7.5 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.053e-11
Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  151 ELGPVMRSLGPNPPEAELQDMINEVDADGNGTI----------DFPEFLNLMARKMKDTHSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            +L  V+R+LG +P  +++Q+M  ++  DG   +          D  E  N +  K  +  S E     E++ AF++FD +  G I+ A L+ V   LGE L D + DEMIREA  D +  IN ++F ++M
Sbjct:   14 QLKMVLRALGYDPRNSKVQEMTRKIK-DGRSMVMGWHGEKDYMDVDELWNALQSKDDEGDSTEDKVTTEMRSAFKLFDPESKGTITVANLKMVAKELGETLADADFDEMIREAGGDNNTGINEQQFFEIM 142          
BLAST of DY260257 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.053e-11
Identity = 45/166 (27.11%), Postives = 90/166 (54.22%), Query Frame = 1
Query:   16 FTYFRVEKTNGRRKMADPPPDDQISEFKEAFSLFDKDGDGCITTKELGPVMRSLGP-NPPEAELQDMINEVDADGNGTIDFPEFLN--LMARKMKDTHSE---EELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 495
            F  F   K    R +A    ++++++ ++ F   D D +G I+ +E+   +    P    +A + +++  +D++ +G +DF EF+   L   ++++  SE   +  + AF  FD D +GFI+A ELR    + G K     ++ ++ EAD+D DG+I+ +EF +++
Sbjct:  390 FVKFSRLKQFALRALATTLDEEELADLRDQFDAIDVDKNGVISLEEMRQALAKDHPWKLKDARVAEILQAIDSNTDGFVDFGEFVAAALHVNQLEEHDSEKWQQRSRAAFEKFDIDGDGFITAEELR---MHTGLK---GSIEPLLEEADIDNDGKISLQEFRRLL 549          
The following BLAST results are available for this feature:
BLAST of DY260257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 465
Match NameE-valueIdentityDescription
MLRS_RABIT4.135e-1130.22Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_MOUSE4.135e-1130.22Myosin regulatory light chain 2, skeletal muscle i... [more]
MLRS_HUMAN4.135e-1130.22Myosin regulatory light chain 2, skeletal muscle i... [more]
YNE5_CAEEL7.053e-1133.08Uncharacterized calcium-binding protein R08D7.5 OS... [more]
CDPKG_ARATH7.053e-1127.11Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260257 ID=DY260257; Name=DY260257; organism=Citrus clementina; type=EST; length=1038bp
GGAAAAAAATAAATATTTACCTATTTCCGAGTTGAAAAAACCAACGGAAG
AAGAAAAATGGCGGATCCGCCTCCGGACGATCAGATCTCTGAGTTCAAAG
AGGCCTTCAGCTTGTTTGACAAGGATGGCGACGGTTGCATTACCACCAAG
GAGCTTGGCCCTGTTATGAGGTCACTGGGTCCGAACCCCCCTGAGGCTGA
GCTCCAGGACATGATCAATGAAGTGGATGCTGATGGTAATGGAACTATTG
ATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACCCAC
TCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCAGAA
TGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAGGAG
AGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGATGTT
GATGGTGATGGCCAGATAAATTATGAGGAATTTGTCAAGGTTATGATGGC
CCAGTAATGACCCCCACCCACCCATACTTATAAAATGGGTTGACTAAATT
ATAAAGGGATTCCTAGTTTTCCCTTTTACAATTTTTAATTTGATAGTCCT
GAGGGTCCGGCTAAAGGAAGCAATGGTCTTTTAATGGTGATGGGCCTGAT
GGTGTAGGAAGAATGTTGTCCCCCCCGTCAATATGTCTTGTGACTCCCCA
AACTTTTCCGTTTTTATTATTTTAGTTGTTCTGCTGTTCCCAAACAAAAA
AAAAAAAAAAAACCCCACCTTCCCTGGACCAAGTTGGCCTTCTAAAAAAG
GCCTTGCCTATCAATTTTGTTGGCCACCAACCCGGCCCCCATCCCCCCCA
AACAAAATCCTTTTTTTTCCCCCCCCCGCTGAAACCCCCCAAAAGGGGAG
CCTATTAACGGGGCCCCAACCGGGTTCCCCCGGCCCCCCCCGGCCCGGGG
TCCCCAAACCCCCTGCGGTGCCCCTTGCCCCCAAAATAAAAAACATCCCC
CCCCCGGTTACACACACCCCCCCCCCCCCCCCCCAACA
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