DY260259

Overview
NameDY260259
Unique NameDY260259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1465 contig Ccv1_Contig1465:1..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.770e-54
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            + RRPARCYR   NKPYPKSR+ R VPD +IRI+D+G K+ GVDEFP C+ LVS E E ++SEALEAARI  NKY+ +  GKD+F
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSF 85          

HSP 2 Score: 116.701 bits (291), Expect = 2.770e-54
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGFPQ 576
            GK  FHLRVR HPFHV+ INKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SV  KDS+   A EAL   +++FPG  +    +K GF Q
Sbjct:   81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.612e-54
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +GRRPARCYR I NKPYPKSRFCRGVPD +IRI+D+G K+  VD FP CV ++S E+E++SSEALEAARI  NKYM +  GKD F
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGF 85          

HSP 2 Score: 109.383 bits (272), Expect = 3.612e-54
Identity = 58/93 (62.37%), Postives = 64/93 (68.82%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570
            GK  FHLRVR HPFHV  INKMLSCAGADRLQTGMRGA+GKP G  ARV IG +L S+  K+ N   A EA   AKF+FPG       +K GF
Sbjct:   81 GKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGF 173          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.966e-50
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +GRRP RCYR +  K YPKSRF RGVPD +I+I+D+G +K GV EFP  V  +S E+EN+S+EALEAARI  NKYM + AGKD F
Sbjct:    1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNF 85          

HSP 2 Score: 109.768 bits (273), Expect = 2.966e-50
Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570
            GK  FHLR+RV+PFHVL INKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+  K+S    A EAL  AK +FPG  K     K GF
Sbjct:   81 GKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGF 173          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.059e-48
Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +GRRPA+CYR   NK YPKSR+CRGVP+ +IRIYD GM+K   D FP    L+S E+E + SEALEAARI  NKYM + AGK+A+
Sbjct:    1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAY 85          

HSP 2 Score: 101.679 bits (252), Expect = 2.059e-48
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPG 534
            GK  +H+RVRVHPFHV  INKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+  K  +      AL  A ++F G
Sbjct:   81 GKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAG 161          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.570e-33
Identity = 82/136 (60.29%), Postives = 89/136 (65.44%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGFPQV*PQ*LFEVQVQEPYCAPRGNGQAFLDVPDPLASPPPGRAF 699
            GK  FHLRVRVHPFHVL INKMLSCAGADRLQTGMRGAFGKP G CARVAIGQVLLSV CKD N+  AQEAL  AKF+FP   K    +K GF +       + +  E    P G     L     LA+  PGRAF
Sbjct:   10 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYK-SENRIVPDGVNAKLLGCHGRLAARQPGRAF 144          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.668e-26
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+  +HL++RV+P HVL  N + + AGADR+Q GMR AFGKP GT ARV  GQ +++V     N   A+EAL  A  +FP P
Sbjct:   78 GRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFP 159          

HSP 2 Score: 61.6178 bits (148), Expect = 6.668e-26
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            RPAR YR+     Y +  + +GVPDP+I+ +D+G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ +  G+  +
Sbjct:    4 RPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNY 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.125e-25
Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            + RRPARCYR   NKPYPKSR+ R VPD +IRIYD+G KK  VDEFP CV LVS E E +SSEALEAARI  NKYM   +G+DAF
Sbjct:    1 MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAF 85          

HSP 2 Score: 115.546 bits (288), Expect = 5.583e-25
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  265 ATNIWPSLPGKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570
            A     ++ G+  FHLRVRVHPFHVL INKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SV  KDSN     E L  A+++FPG  K    +K GF
Sbjct:   72 ANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGF 173          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.491e-25
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G   F+ R+RV+P HV+  NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +    +EAL     +FP P +
Sbjct:   80 GDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSR 163          

HSP 2 Score: 59.3066 bits (142), Expect = 2.491e-25
Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RPARCY      PY +  +  GVP P+I  +++G  ++ ++++     LV  E   +   ALEAARIA NKY+A   G   F F
Sbjct:    4 RPARCYTHFSGPPYTRREYIHGVPPPKITRFEMG-NREMMEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYF 86          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.969e-24
Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+M +  ++RV+P  +L  +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EAL  A  + P P
Sbjct:   79 GRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVP 160          

HSP 2 Score: 62.7734 bits (151), Expect = 9.969e-24
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RP RCYR +   PY +  + +GVP P++  + +G       EFP  V LV+     +   ALEAAR+A NKY+ +  G+  + F
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKF 85          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.300e-23
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  283 SLPGKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            S  G   + L++RV+P HVL  NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ V  +  +   A+EAL  A  + P P +
Sbjct:   75 STVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPAR 161          

HSP 2 Score: 52.7582 bits (125), Expect = 6.300e-23
Identity = 27/78 (34.62%), Postives = 40/78 (51.28%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAG 293
            RPARCY      PY +  +  GVP P+I  +++G       ++ +   LV  E   +   ALEAAR+  NKY++   G
Sbjct:    4 RPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVG 78          
The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL10A_SCHPO2.770e-5463.5360S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_CAEEL3.612e-5468.2460S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_ENCCU2.966e-5062.3560S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_EUGGR2.059e-4861.1860S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_TOBAC5.570e-3360.2960S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_METKA6.668e-2650.0050S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_YEAST1.125e-2568.2460S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_AERPE2.491e-2548.8150S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_METJA9.969e-2445.1250S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_STAMF6.300e-2347.1350S ribosomal protein L10e OS=Staphylothermus mari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bp
GTTTCTTGGGTCCCTTGTTTAGTTGCCGAATACCTACCAGGGCTTTCGCC
CTGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAATCAATAAGCCGTA
TCCCAAATCCCGCTTTTGTCGTGGTGTGCCTGATCCCCAGATCAGGATCT
ATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTG
CCCTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGC
TGCTCGAATTGCTTGCAACAAATATATGGCCCAGTTTGCCGGGAAAGATG
CCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCCTATCAA
CAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGG
GTGCTTTCGGTAAACCCACGGGCACTTGTGCTAGAGTTGCCATTGGACAG
GTCCTCCTGTCAGTTCCCTGCAAGGATAGCAATAGTCTTCCTGCCCAAGA
GGCTCTTCCTCCTGCAAAGTTCCAGTTTCCCGGTCCCCCAAAAAATCCTT
GTCCGCAGAAAGTGGGGTTTCCCCAAGTTTAGCCCCAGTGATTATTTGAG
GTTCAAGTCCAAGAACCGTATTGTGCCCCAAGGGGTAATGGCCAAGCCTT
CTTGGATGTCCCGGACCCCTTGGCGAGTCCCCCACCCGGAAGAGCCTTTT
CCCACATGCCCCAGCTTACGGATTCGCCCCCTGAGCCCCACCTTTTCGAA
AAAATTTTCCCATTGCACGGTTTTTACTCCCGGGTACAGTAATTGCTCCG
CATGGCCAAGCTCCCCTCAATCCCCCTTTTTTCCAACCACCCGGCTTCCT
CCCCCTCTCTAACCTCACCCACACATCCCCCGCCCCTCCCCCCCCCTCTC
CCCCCACCGCCCTAAACCCCTGTCCCTTCTACACAACTCTCTTTCCCCCT
CTCCTCCCCACCTCCCCGCCGCCCGCGCCCTCCCTCACCCCCCCCCCCCC
ACACTCTCCTAACTACGACACTCCGCTCCGCTCGCCCCCTCCGCTCCACA
CCTTCCCCCCCCCTCCTACCGCCTTCCACACCTCCCTCTCTTCATCCCCC
CCCCCCCCCTCTCCT
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