DY260259
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 2.770e-54 Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 3 Query: 51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 + RRPARCYR NKPYPKSR+ R VPD +IRI+D+G K+ GVDEFP C+ LVS E E ++SEALEAARI NKY+ + GKD+F Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSF 85 HSP 2 Score: 116.701 bits (291), Expect = 2.770e-54 Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGFPQ 576 GK FHLRVR HPFHV+ INKMLSCAGADRLQTGMR AFGKP G ARV IGQ+L+SV KDS+ A EAL +++FPG + +K GF Q Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.612e-54 Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 3 Query: 51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 +GRRPARCYR I NKPYPKSRFCRGVPD +IRI+D+G K+ VD FP CV ++S E+E++SSEALEAARI NKYM + GKD F Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGF 85 HSP 2 Score: 109.383 bits (272), Expect = 3.612e-54 Identity = 58/93 (62.37%), Postives = 64/93 (68.82%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570 GK FHLRVR HPFHV INKMLSCAGADRLQTGMRGA+GKP G ARV IG +L S+ K+ N A EA AKF+FPG +K GF Sbjct: 81 GKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGF 173
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.966e-50 Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 3 Query: 51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 +GRRP RCYR + K YPKSRF RGVPD +I+I+D+G +K GV EFP V +S E+EN+S+EALEAARI NKYM + AGKD F Sbjct: 1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNF 85 HSP 2 Score: 109.768 bits (273), Expect = 2.966e-50 Identity = 58/93 (62.37%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570 GK FHLR+RV+PFHVL INKMLSCAGADRLQTGMRG+FGKP G ARV Q +LS+ K+S A EAL AK +FPG K K GF Sbjct: 81 GKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGF 173
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.059e-48 Identity = 52/85 (61.18%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 +GRRPA+CYR NK YPKSR+CRGVP+ +IRIYD GM+K D FP L+S E+E + SEALEAARI NKYM + AGK+A+ Sbjct: 1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAY 85 HSP 2 Score: 101.679 bits (252), Expect = 2.059e-48 Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPG 534 GK +H+RVRVHPFHV INKMLSCAGADRLQ GMRGAFGKP G ARV IGQ L+S+ K + AL A ++F G Sbjct: 81 GKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAG 161
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 5.570e-33 Identity = 82/136 (60.29%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGFPQV*PQ*LFEVQVQEPYCAPRGNGQAFLDVPDPLASPPPGRAF 699 GK FHLRVRVHPFHVL INKMLSCAGADRLQTGMRGAFGKP G CARVAIGQVLLSV CKD N+ AQEAL AKF+FP K +K GF + + + E P G L LA+ PGRAF Sbjct: 10 GKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYK-SENRIVPDGVNAKLLGCHGRLAARQPGRAF 144
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.668e-26 Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537 G+ +HL++RV+P HVL N + + AGADR+Q GMR AFGKP GT ARV GQ +++V N A+EAL A +FP P Sbjct: 78 GRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFP 159 HSP 2 Score: 61.6178 bits (148), Expect = 6.668e-26 Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 RPAR YR+ Y + + +GVPDP+I+ +D+G +F V LV+ E+ V+ ALEAAR+A N+Y+ + G+ + Sbjct: 4 RPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNY 82
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.125e-25 Identity = 58/85 (68.24%), Postives = 65/85 (76.47%), Query Frame = 3 Query: 51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305 + RRPARCYR NKPYPKSR+ R VPD +IRIYD+G KK VDEFP CV LVS E E +SSEALEAARI NKYM +G+DAF Sbjct: 1 MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAF 85 HSP 2 Score: 115.546 bits (288), Expect = 5.583e-25 Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 265 ATNIWPSLPGKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPKNPCPQKVGF 570 A ++ G+ FHLRVRVHPFHVL INKMLSCAGADRLQ GMRGA+GKP G ARV IGQ++ SV KDSN E L A+++FPG K +K GF Sbjct: 72 ANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGF 173
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.491e-25 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543 G F+ R+RV+P HV+ NKM++ AGADRLQ GMR AFGKP GT ARV G V+L V + + +EAL +FP P + Sbjct: 80 GDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSR 163 HSP 2 Score: 59.3066 bits (142), Expect = 2.491e-25 Identity = 32/84 (38.10%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311 RPARCY PY + + GVP P+I +++G ++ ++++ LV E + ALEAARIA NKY+A G F F Sbjct: 4 RPARCYTHFSGPPYTRREYIHGVPPPKITRFEMG-NREMMEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYF 86
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 9.969e-24 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 1 Query: 292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537 G+M + ++RV+P +L +KM + AGADR+ GMR AFGKP GT ARV GQ +L+V A+EAL A + P P Sbjct: 79 GRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVP 160 HSP 2 Score: 62.7734 bits (151), Expect = 9.969e-24 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311 RP RCYR + PY + + +GVP P++ + +G EFP V LV+ + ALEAAR+A NKY+ + G+ + F Sbjct: 5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKF 85
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 6.300e-23 Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 283 SLPGKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543 S G + L++RV+P HVL NKM++ AGADRLQ GMR AFGKP GT ARV G +++ V + + A+EAL A + P P + Sbjct: 75 STVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPAR 161 HSP 2 Score: 52.7582 bits (125), Expect = 6.300e-23 Identity = 27/78 (34.62%), Postives = 40/78 (51.28%), Query Frame = 3 Query: 60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAG 293 RPARCY PY + + GVP P+I +++G ++ + LV E + ALEAAR+ NKY++ G Sbjct: 4 RPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVG 78 The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bpback to top |