DY260259

Overview
NameDY260259
Unique NameDY260259
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1115
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1465 contig Ccv1_Contig1465:1..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 5.893e-20
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            F+L+V  +P HVL  +KM + AGADR+ +GMR AFG+P GT ARV    V++     ++++   + AL  A  + P P K
Sbjct:   82 FYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCK 161          

HSP 2 Score: 55.8398 bits (133), Expect = 5.893e-20
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +PAR Y +I    Y +  F  GVP P+I  +  G +KK   +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F
Sbjct:    4 KPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.297e-19
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            F+L+V  +P HVL  +KM + AGADR+ +GMR AFG+P GT ARV    V++     ++++   + AL  A  + P P K
Sbjct:   82 FYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCK 161          

HSP 2 Score: 56.225 bits (134), Expect = 1.297e-19
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            +PAR Y +I    Y +  F  GVP P+I  +  G +K+   +FP  + L++ E   V   ALEAAR++ N+ M + AG D F
Sbjct:    4 KPARMYTRITGPAYTRKEFMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.298e-19
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            G+  FH+++RV+P  VL  NK  + AGADR+ +GMR A+GK   T ARV+  Q + ++     + + A++AL  A  + P P
Sbjct:   78 GRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTP 159          

HSP 2 Score: 54.299 bits (129), Expect = 1.298e-19
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            R+PA  YR + ++ + + ++  GVP  Q+  +D+G K     +FP  + L++ E+  +   ALEAARI  N+ M   AG+  F
Sbjct:    3 RKPASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.298e-19
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            G+  +   +RV+P  +L  NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EAL     + P
Sbjct:   78 GRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          

HSP 2 Score: 58.5362 bits (140), Expect = 1.298e-19
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RPARCYR I  + Y +  + R VP P++  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  + F
Sbjct:    4 RPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLF 84          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.688e-19
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            GK  +  +VRV+P  VL  NK  + AGADR+  GMR AFGK  GT ARV  GQ + ++    +N   A+EA+  A  + P P
Sbjct:   78 GKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLPTP 159          

HSP 2 Score: 53.1434 bits (126), Expect = 1.688e-19
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 3
Query:   51 LGRRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            + R+P R Y++     Y +  +  GVP  ++  +D+G      +E P  V LV  E   +  +ALEAARI+ N+Y+    GK  + F
Sbjct:    1 MARKPGRMYKKFSGPAYTRREYMGGVPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRF 84          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_CALMQ (50S ribosomal protein L10e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.194e-19
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  304 FHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            F+L++  +P HV+  NKML+ AGADRLQ GMR AFG PTG   ++  G+VL+ V  +D N   A+EAL  A+ + P P
Sbjct:   85 FYLKIIKYPHHVIRENKMLAMAGADRLQEGMRLAFGVPTGRAIQIEPGEVLMIVEVEDRNITHAKEALNRARAKLPLP 162          

HSP 2 Score: 44.2838 bits (103), Expect = 2.194e-19
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVG-MKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQ 284
            RPARCY++I  +PY + ++  G P  QI  +++G  K K  + F     L   E   +   ALEAAR    KY+++
Sbjct:    4 RPARCYKRI-KRPYTRLKYIHGAPYVQIPRFEMGATKAKDRERFTSVAVLRVLEGGQIRVNALEAARQMAYKYLSK 78          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.196e-19
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGP 537
            GKM +++++RV+P  VL  NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N + A++AL  A  + P P
Sbjct:   79 GKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTP 160          

HSP 2 Score: 51.2174 bits (121), Expect = 2.196e-19
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 3
Query:   57 RRPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGK 296
            R+P   YR +  + + + ++  GVP  Q+  YD+G K      FP  + L+  EK  +   ALEAARI  N+++ +  GK
Sbjct:    3 RKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGK 80          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.861e-19
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFPGPPK 543
            G+  F LRV V P H+L  NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V     N   A+EAL  A  + P P +
Sbjct:   78 GEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIPLPSR 161          

HSP 2 Score: 44.2838 bits (103), Expect = 2.861e-19
Identity = 27/82 (32.93%), Postives = 37/82 (45.12%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAF 305
            RP RCYR     PY +  + +  P   I  +D+G  K     F   + LV      + + ALEAAR   NKY+    G+  F
Sbjct:    4 RPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANF 82          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.283e-19
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            G+  +   +RV+P  +L  NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EAL     + P
Sbjct:   78 GRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          

HSP 2 Score: 56.225 bits (134), Expect = 6.283e-19
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RPARCYR    + Y +  + R VP P++  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  + F
Sbjct:    4 RPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLF 84          
BLAST of DY260259 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 6.283e-19
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  292 GKMPFHLRVRVHPFHVLPINKMLSCAGADRLQTGMRGAFGKPTGTCARVAIGQVLLSVPCKDSNSLPAQEALPPAKFQFP 531
            G+  +   +RV+P  +L  NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EAL     + P
Sbjct:   78 GRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          

HSP 2 Score: 56.225 bits (134), Expect = 6.283e-19
Identity = 31/84 (36.90%), Postives = 45/84 (53.57%), Query Frame = 3
Query:   60 RPARCYRQIINKPYPKSRFCRGVPDPQIRIYDVGMKKKGVDEFPFCVPLVSWEKENVSSEALEAARIACNKYMAQFAGKDAFPF 311
            RPARCYR    + Y +  + R VP P++  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  + F
Sbjct:    4 RPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLF 84          
The following BLAST results are available for this feature:
BLAST of DY260259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL10_THEAC5.893e-2041.2550S ribosomal protein L10e OS=Thermoplasma acidoph... [more]
RL10_THEVO1.297e-1941.2550S ribosomal protein L10e OS=Thermoplasma volcani... [more]
RL10_METBU1.298e-1939.0250S ribosomal protein L10e OS=Methanococcoides bur... [more]
RL10_METMP1.298e-1937.5050S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_UNCMA1.688e-1943.9050S ribosomal protein L10e OS=Uncultured methanoge... [more]
RL10_CALMQ2.194e-1948.7250S ribosomal protein L10e OS=Caldivirga maquiling... [more]
RL10_METBF2.196e-1943.9050S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_THEPD2.861e-1947.6250S ribosomal protein L10e OS=Thermofilum pendens ... [more]
RL10_METM76.283e-1937.5050S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM66.283e-1937.5050S ribosomal protein L10e OS=Methanococcus maripa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260259 ID=DY260259; Name=DY260259; organism=Citrus clementina; type=EST; length=1115bp
GTTTCTTGGGTCCCTTGTTTAGTTGCCGAATACCTACCAGGGCTTTCGCC
CTGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAATCAATAAGCCGTA
TCCCAAATCCCGCTTTTGTCGTGGTGTGCCTGATCCCCAGATCAGGATCT
ATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTG
CCCTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGC
TGCTCGAATTGCTTGCAACAAATATATGGCCCAGTTTGCCGGGAAAGATG
CCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCCTATCAA
CAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGG
GTGCTTTCGGTAAACCCACGGGCACTTGTGCTAGAGTTGCCATTGGACAG
GTCCTCCTGTCAGTTCCCTGCAAGGATAGCAATAGTCTTCCTGCCCAAGA
GGCTCTTCCTCCTGCAAAGTTCCAGTTTCCCGGTCCCCCAAAAAATCCTT
GTCCGCAGAAAGTGGGGTTTCCCCAAGTTTAGCCCCAGTGATTATTTGAG
GTTCAAGTCCAAGAACCGTATTGTGCCCCAAGGGGTAATGGCCAAGCCTT
CTTGGATGTCCCGGACCCCTTGGCGAGTCCCCCACCCGGAAGAGCCTTTT
CCCACATGCCCCAGCTTACGGATTCGCCCCCTGAGCCCCACCTTTTCGAA
AAAATTTTCCCATTGCACGGTTTTTACTCCCGGGTACAGTAATTGCTCCG
CATGGCCAAGCTCCCCTCAATCCCCCTTTTTTCCAACCACCCGGCTTCCT
CCCCCTCTCTAACCTCACCCACACATCCCCCGCCCCTCCCCCCCCCTCTC
CCCCCACCGCCCTAAACCCCTGTCCCTTCTACACAACTCTCTTTCCCCCT
CTCCTCCCCACCTCCCCGCCGCCCGCGCCCTCCCTCACCCCCCCCCCCCC
ACACTCTCCTAACTACGACACTCCGCTCCGCTCGCCCCCTCCGCTCCACA
CCTTCCCCCCCCCTCCTACCGCCTTCCACACCTCCCTCTCTTCATCCCCC
CCCCCCCCCTCTCCT
back to top